Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00062 ATGGAGACTCTTCAGACTCTTCTTCTTCTTCCAATTTCGTTCACTGCTTTCGTCCTTATCCTGATCTTCCTTCTGCAAAAATGGCTGCTTTCCAATCAAAACACGTCAAAAGCCTCACCCCCATCTCCGCCAAAGCTTCCAATCGTCGGCCACCTTTTGAATCTCGGCCGCCTTCCTCGTATCACTCTCCAAAACTATGCTCGTCGCTATGGTCCTCTGTTTCTCCTTCACTTGGGCGCCAAGCCCACCATCGTGGTCTCTTCTCCCCAACTGGCTCGTGATATCATGAAGACCCACGACCTCATCTTTGCCAATCGACCCAAATCAAGCGTGGCTGATAAGCTTCTTTATGGGTCAAAAGATATAGCGATGTCTCCTTATGGCGAATATTGGAGGCAGATGAGAAGTATTGGCGTGCTCCACCTTTTGAGCAACAACAGGGTCCAATCATTTCGTTATGTTAGAGAACAAGAAGTCAAAGCCATGATCGACAACATCCAACACAATCCACTTTCGGTTAACTTGACTGAACTCTTCTCTCGACTGACCAACGACGTGATTTGCAGGGTGGCTTTAGGGAGAAAATATGGGATTGGTGAAGACGGGACGAAGTTTAGGTCCCTTCTCTTGCAATTTGGGGAATCAATGGCGAGTTTTAGCATTCGAGACTTCATTCCATGGCTGGGTTGGATTGATGGTATTAGTGGGTTGGACGTCCAAGCGAAGAGGGCAGCCAAAGAGCTGGATGTTTTCTTAGATAGAGTGATTCAAGATCATGTCCATCCAGAGAACAGAGATGAACACAATGACTTGGTGGATACTCTACTCTGTATCAAAACAGAGGACTCCATTGGTTTCCCCCTTGAAATGGACAGCATTAAAGCTGTAATCTTGAGTTCTTGTAAAGTGATGGGAGGGAAAAGTTCTAAGCAGGGAAGTTCAAGATACATTTCGTCTATTAGGTCTAGCTCACAGCAGTGGAGTCATTTCGGTTATCCGGAGTCGGCATACGCTCAACCAAGAACCACGCCCCAGTATCAATTTGCTCCTCCGACTCCGGGGTATGGAGGAACTCAGGCCCCAGGGGCAAGAAAGAGGGTGGAGAGGAAATATTCAAGGATAGATGATCACTATAATAGTTTAGATCAGGTTACTGCAGCATTGGCTAGTGCTGGCCTGGAGTCTTCAAATCTTATTGTTGGTATAGATTTCACCAAGAGCAATGAGTGGACAGGGCCAACATCATTTGCCCCTATTATCGAAATGGCTATCACAATCGTAGAGCAAAGTGGCGGCCAGTACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTTGATACTGAGCGTGGACAGTTTAGCTCACAGGAAAAGAAAACCATTGAGGCAATTGTGAAAGCTAGTGCCAGTAGAGGGAAGGCAATCGACCGGGTTCCTCTTCCGCCTCCTCGTTACGGTCCTAGCACCCTAAAGACCTCAAACACGAGCAGTTCTTGCGCAACACCACCCTCAAATGTTGGAGTTGCTCCTGTCCAATCTGCGCCTCCTCTAAGTTCAGTTTCTGATGACCATGCTTGTCCCATTTGCATCACCAATGCAAAGGATATGGCTTTTGGCTGTGGACATCAGAAGAAACCCCATCTTTCTTCCCTCATTGCTTCTGTGGCCCAAGAAGACGACACCATCACCATTGACCAGAAACTCGCCGGCGACGAAGAAGGTTGGGAGAGTGAAGGCGAAGCGGTTGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGAGGACGAGGAAGAAGAAGGGTCTTATGTTGAACCAAACGAAGATGCTAAGTTATTTGTTGGGAATTTGCCTTATGACGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGTTGGAACTGTGGAGATTGCTGAGGTTGTTTACAACAGAGACACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCCGTGGATGCCTTAAACCGTTATGACTTATCAGGGAGGCTGTTGACGGTAAATAAGGCTGCCCCCAGAGGTTCTAGGCCAGAACCCACACCTCGAACATTTCAATCCGCTTACAGACTCTATGTAGGTAATCTTCCATGGGATGTTGATAATGCACGCTTGGAGCAGGTTTTCAGTGAACATGGCAAAGTAGTAGATGCTCGGGTTCTTTACGACAGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTTACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGAAGTATAG 2325 47.18 METLQTLLLLPISFTAFVLILIFLLQKWLLSNQNTSKASPPSPPKLPIVGHLLNLGRLPRITLQNYARRYGPLFLLHLGAKPTIVVSSPQLARDIMKTHDLIFANRPKSSVADKLLYGSKDIAMSPYGEYWRQMRSIGVLHLLSNNRVQSFRYVREQEVKAMIDNIQHNPLSVNLTELFSRLTNDVICRVALGRKYGIGEDGTKFRSLLLQFGESMASFSIRDFIPWLGWIDGISGLDVQAKRAAKELDVFLDRVIQDHVHPENRDEHNDLVDTLLCIKTEDSIGFPLEMDSIKAVILSSCKVMGGKSSKQGSSRYISSIRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGARKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSSQEKKTIEAIVKASASRGKAIDRVPLPPPRYGPSTLKTSNTSSSCATPPSNVGVAPVQSAPPLSSVSDDHACPICITNAKDMAFGCGHQKKPHLSSLIASVAQEDDTITIDQKLAGDEEGWESEGEAVGGSEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 311645 321280 - CmaCh11G000620.1 Cma11g00062 302571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00062 774 Gene3D - 560 695 IPR012677 -
Cma11g00062 774 Gene3D - 696 774 IPR012677 -
Cma11g00062 774 SMART rrm1_1 709 774 IPR000504 GO:0003723
Cma11g00062 774 SMART rrm1_1 615 688 IPR000504 GO:0003723
Cma11g00062 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 708 774 IPR000504 GO:0003723
Cma11g00062 774 PANTHER RIBONUCLEOPROTEIN 585 773 - -
Cma11g00062 774 Pfam Copine 410 472 IPR010734 -
Cma11g00062 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 710 774 IPR000504 GO:0003723
Cma11g00062 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 616 685 IPR000504 GO:0003723
Cma11g00062 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 614 692 IPR000504 GO:0003723
Cma11g00062 774 Gene3D Cytochrome P450 32 300 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00062 774 SUPERFAMILY RNA-binding domain, RBD 703 773 IPR035979 GO:0003676
Cma11g00062 774 MobiDBLite consensus disorder prediction 574 593 - -
Cma11g00062 774 MobiDBLite consensus disorder prediction 478 520 - -
Cma11g00062 774 CDD RRM_HP0827_like 615 692 - -
Cma11g00062 774 SUPERFAMILY RNA-binding domain, RBD 610 703 IPR035979 GO:0003676
Cma11g00062 774 MobiDBLite consensus disorder prediction 490 520 - -
Cma11g00062 774 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00062 774 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00062 774 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00062 774 SUPERFAMILY Cytochrome P450 39 298 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00062 774 Pfam Cytochrome P450 40 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00062 774 PANTHER OS02G0815200 PROTEIN 585 773 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00062 - - - cmax:111497450 580.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00083 Cma11g00062 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00062 Cma-Chr11:311645 Cma13g00766 Cma-Chr13:6622562 1.03E-54 dispersed
Cma14g00213 Cma-Chr14:918156 Cma11g00062 Cma-Chr11:311645 8.53E-12 dispersed
Cma14g01844 Cma-Chr14:13139202 Cma11g00062 Cma-Chr11:311645 7.67E-11 dispersed
Cma15g00481 Cma-Chr15:2153513 Cma11g00062 Cma-Chr11:311645 8.63E-08 dispersed
Cma11g00062 Cma-Chr11:311645 Cma11g00063 Cma-Chr11:322087 1.06E-170 tandem
Cma08g00160 Cma-Chr8:876765 Cma11g00062 Cma-Chr11:311645 1.94E-26 transposed
Cma10g00083 Cma-Chr10:346447 Cma11g00062 Cma-Chr11:311645 1.80E-12 wgd
Cma11g00062 Cma-Chr11:311645 Cma13g00764 Cma-Chr13:6619863 9.31E-69 wgd
Cma11g00062 Cma-Chr11:311645 Cma18g00200 Cma-Chr18:1079299 1.29E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00062 Cma_Chr11 FPKM 18.023226 17.39389 58.81073 58.855198 254.375946 231.945419 253.926117 50.515377 50.34444 48.347115