Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00063 ATGGAAACTCTTCTTCTTCAATCATGTCTTCATCCCATTTTGTTCGGTGGTTGCGTCCTTGTCCTGATCTTCCTTCTCCACAAATGGCTGCTTTCCAATCAAAACACATCAAAAGCCTCACCCCCATCTCCGCCAAAGCTTCCAATCTTCGGCCACCTTTTGAAGCTTGGCCGCCTTCCTCATATCACTCTCCAAAACTATGCTCGCCGCTATGGTCCTCTGTTTCTCCTTCACTTGGGCACCAAGCCCACCATCGTGGTCTCTTCTCCCCAACTGGCTCGTGATATCATGAAGACCCACGATCTTACCTTTGCCAATCGACCCAAATCAAGCATGGCTGATAAGCTTCTTTATGGGTCAAAAGATATAGCGATGTCTCCTTATGGTGAATATTGGAGGCGGATGAGAAGCATCGGCGTGCTCCGTCTTTTAAGCCACAACAGTGTCCAATCGTTTCGTTGTGTTAGAGAACAAGAAGTGAAGGCCATGATCGACAACATCCAACACAATCCAATTTCGGTTAATTTGACTGAACTCTTCTCTCGACTGACCAACGACGTGATTTGCAGGGTGGCTTTTGGGAGAAAATATGGGATTGGTCAAGATGGGTCGAAGCTTAGGTCCCTTCTCTTGCAATTTGGGGAGTCATTGGCGAGTTTTATCATTCGAGACTACGTTCCATTGCTGGGTTGGATCGATGGCGTTTCTGGGTTCGACGTCAAAGCGAAGAGGGTAGCCAAAGAGCTGGACGTTTTGTTAGATGAAGTGATTGAAGATCATATTCATTTACAGAACAGAGCAGAGCTCAAGGACTTGATGGATATTCTACTCTCTATCCAAGCAGAGAACTCCACTGGCTTCCCCCTTCAAATGGGGAGCATAAAAGCTTTAATCTTGGACATGTTTGCAGCAGGCGTAGACTCGACGTACGCAGCATTAGAATGGGCAATGTCAGAATTGTTGAAACACCCAGAAAGCATGAAGAAATTGAAGGGTGAGATGAGGGAAATAATGGGTGGGAAAGGCTATGTGGGGGAGGAGGATGTAGAAAAGATGCATTACTTGAAGGCAATAATCAAGGAAACGTTGCGGCTACACCCACCACTCCCGCTTCTGTTCAGAGAATCGAGTCAATCCATTAAGGTGAAGGGATACGATATTAATCCCGGCACTCGGGTTATGATCAATGTATGGGCCATAGGAAGAGACCCAGAGGTGTGGGAAGAAGCAGAGGAGTTTCGACCGGAGAGGTTCATGACGAGTTCGATGGATTTTAAGGGTCAGAATATGGAGTTGATCCCGTTCGGTGCAGGGCGAAGAGGGTGTCCTGGAATTGCGTTTGCAATGGCAATGATTGAGATGGCTTTGGCGAATGTGGTGCATAAATTTGAGTGGAAGTTGCCGAATGGAGCAGCCGGGGAGGATTTGGACATGACTGGAGTGTTTGGGTTAGCCATTCATAGGGAGTTTCCACTTGTGGCAATCGCAACTTCTTGTTGTTAG 1503 47.11 METLLLQSCLHPILFGGCVLVLIFLLHKWLLSNQNTSKASPPSPPKLPIFGHLLKLGRLPHITLQNYARRYGPLFLLHLGTKPTIVVSSPQLARDIMKTHDLTFANRPKSSMADKLLYGSKDIAMSPYGEYWRRMRSIGVLRLLSHNSVQSFRCVREQEVKAMIDNIQHNPISVNLTELFSRLTNDVICRVAFGRKYGIGQDGSKLRSLLLQFGESLASFIIRDYVPLLGWIDGVSGFDVKAKRVAKELDVLLDEVIEDHIHLQNRAELKDLMDILLSIQAENSTGFPLQMGSIKALILDMFAAGVDSTYAALEWAMSELLKHPESMKKLKGEMREIMGGKGYVGEEDVEKMHYLKAIIKETLRLHPPLPLLFRESSQSIKVKGYDINPGTRVMINVWAIGRDPEVWEEAEEFRPERFMTSSMDFKGQNMELIPFGAGRRGCPGIAFAMAMIEMALANVVHKFEWKLPNGAAGEDLDMTGVFGLAIHREFPLVAIATSCC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 322087 324549 - CmaCh11G000630.1 Cma11g00063 302572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00063 500 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 SUPERFAMILY Cytochrome P450 41 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Cma11g00063 500 Pfam Cytochrome P450 41 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PANTHER CYTOCHROME P450 71A21-RELATED 19 498 - -
Cma11g00063 500 PANTHER CYTOCHROME P450 71B11-RELATED 19 498 - -
Cma11g00063 500 Gene3D Cytochrome P450 27 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma11g00063 500 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00063 - - - csv:101203222 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00089 Cma-Chr10:365303 Cma11g00063 Cma-Chr11:322087 0 dispersed
Cma11g00063 Cma-Chr11:322087 Cma13g00764 Cma-Chr13:6619863 1.49E-151 dispersed
Cma11g00062 Cma-Chr11:311645 Cma11g00063 Cma-Chr11:322087 1.06E-170 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00063 Cma_Chr11 FPKM 0.15325 0.349628 0.48329 0.312129 0.0 0.0 0.0 17.779022 18.20924 16.524403