Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00069 ATGTCTCGATCAGATTACAACACACAGTTGCTTAATCTCGATGAAGCCCATTTGGTTTCAGAGTGTGAGAGGGATTTGAAGGGGTTGGATAATGGAGAGGGATGGGAGGAGGTGATGACTGAGATAAGGAAGCAGATGGGGCTGGCGGGTCCTCTGGTTTTGGTGAGCTTTTTGCAGTATAGTTTGCAGCTGATATCGATCATGTTCATTGGCCATCTCGGAGAGCTGCAACTCTCTGGTGCTTCAATGGCATTCTCTTTTGCTGGAGTCACTGGCTTTAGTCTCTTGCTAGGAATGGGCAGTGCATTAGAGACACTATGTGGACAAGCCTATGGAGCAAAACAATATCACATGCTCGGGATCCACATGCAAAGAGCCATGGTAGTCATTTCAATTATCTGCATTCCCATAGCCCTTTTGTGGGCATCAATCCAACAAATCTTCACACTTCTCAAACAAGACCCACTCATTTCAGAGCAAGCTGGAATCTATGGCAAGTGGCTAATCCCCAGCATCATCCCTTATGTCCTTCTTCAGTGCCAACTTAGATTCTTGCAGACACAAAATCTAACTTCTCCATTGCTGATTGCCACCGGAGCTTCCAGTTTGATCCATCTTTTTGTTTGTTGGGGTTTGGTTTATGGATTTGGGTTTGGCATCAGAGGAGCTGCTTTGTCCTCTGCCATAACTTACTGGGTCAATGTGCTGGTTTTGGGTCTGTACATCAAGTTTTCTCCTCAATGTCAGAAGACTTGGACTGGCTTCTCCATTGATGGAATCAAGAATTTGGTTGGCTTCTTGGCTTTGGCGATTCCTTCTTCACTCATGATATGCTTGGAGTACTGGTTGAGCGAGTTTTTAGTTCTCATGTCCGGGCTTCTTCCCAATCCAGGGTTGGAAACGTCGATGCTGTCGATCAGGGAAGGCAACGGCAGCTAG 939 46.22 MSRSDYNTQLLNLDEAHLVSECERDLKGLDNGEGWEEVMTEIRKQMGLAGPLVLVSFLQYSLQLISIMFIGHLGELQLSGASMAFSFAGVTGFSLLLGMGSALETLCGQAYGAKQYHMLGIHMQRAMVVISIICIPIALLWASIQQIFTLLKQDPLISEQAGIYGKWLIPSIIPYVLLQCQLRFLQTQNLTSPLLIATGASSLIHLFVCWGLVYGFGFGIRGAALSSAITYWVNVLVLGLYIKFSPQCQKTWTGFSIDGIKNLVGFLALAIPSSLMICLEYWLSEFLVLMSGLLPNPGLETSMLSIREGNGS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 339242 342183 - CmaCh11G000690.1 Cma11g00069 302578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00069 312 PANTHER PROTEIN DETOXIFICATION 35 307 - -
Cma11g00069 312 Pfam MatE 51 210 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00069 312 PANTHER MULTIDRUG RESISTANCE PROTEIN 35 307 - -
Cma11g00069 312 CDD MATE_eukaryotic 41 306 IPR045069 GO:0042910|GO:1990961
Cma11g00069 312 TIGRFAM matE: MATE efflux family protein 51 290 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00069 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101222547 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00069 Cma-Chr11:339242 Cma11g00297 Cma-Chr11:1473820 1.60E-113 dispersed
Cma11g00069 Cma-Chr11:339242 Cma11g00296 Cma-Chr11:1469380 4.34E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g825 . . . . . . . . . . . Cma11g00069 . . . . Cpe04g01582 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01307 . . . Cmo11g00070 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00069 Cma_Chr11 FPKM 6.774228 6.312913 6.032769 4.957593 6.231763 6.525311 6.757688 6.891989 7.042794 9.356113