Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00070 ATGGCGATGGATCCCAACCCAAAACGTTTCCCCATCCTTTCCTATGTCCTGGCCCGAATCCCCTCTCTCAGCCCTCGATCGCCGCGCGTCGAAACCGACATCGAACAGCCTGCATCTCCGATGTCCCGCAACGCTCCGCATCATTCCTCCCATCCTTCCTCATCCTCCCCCCGAATCGTCGATCACATGCCTCATTTATCGGACCCTAAGTTATTGGCTTCTATGACCAGCGCTATATCTGATGTCGCTAAGACCCGATCCGTCCTCAAAAACCTTGGGGAGAGACCTGACCATGAGGCTGTCGATACTGCTAATGCTAAGCTCGCTGATGTAGAATCCAAGTTGTCTGCCAAGCTCCAGGAAATCGTGCTTTCGTCTAGGCCGGCGGATGTGGAGTTGCTCGAGTGGAGGGCTCATCTTGCTCAGCAAGAGAACGAGTGCCGGGAGGCGGCGGATAAAGAGAAGCAGGTGTATAAGGCGATTGTGCAATTGGATGCGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCTGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCGGAGAGAGGACTGCCGGAGGAGCAACGCTTGGATCCAGTGAACGAGGAGGTCAATGATGATGTTGCGAGGATTCTTCAGGAGGCAAATGAGAAGCAAATTGATCGAGTTAGTCTCTCCGGCCGACGTTTGCGGTTCTTGCCTGAAGAATTTGGACGTATTCGGGGATTGGTTGTGCTTGATATTTCCTGCAATCAACTCAAGATTATCCCTGATTCGATATCCGGCTTAGAAAATCTAGAAGAGATGAATGCCTCATCCAATCTTCTGGGGACATTGCCTGACTCAATTGGCTTACTGCAAAAGCTGAAACTCCTGAATGTCTCCGGAAACAAGTTGCACGCCCTTCCTGACACAATATGCCAGTGCAGGTCATTGGTGGAGTTAGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGCAGAAGCTTGCTATCCAGTTAAACAAAATACGTTCACTTCCCTCTTCTGTTTGTGGTATGAGCTCTTTGCGTTACCTGGATGCTCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAATTGACTCAACTTGAGTATCTCAACCTAAGCAGTAACTTTACTGACCTTAATGAACTTCCACAGACCTTCGGTGATTTATCCAGCCTTAGGGAACTTGATCTTAGCAATAACCAGATTCACTCTCTACCTGATACATTTGGCCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTGAAACTCCACCCATGGAAGTCGTAAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAGAGGTGGCTTGAAATTCTTGAGGAGGAAGATAGAAAAAGAACTCTTGCAGTGGAAGAACAAGGACAGACTGGATGGCTGACTCGAAGCACTTCTTGGGTGAAGACTTACGTTTCTGGGGTTACAGAAACCGTGTCTGGTATTGTTGGATCTCCTAAAAGTCCGAAAGACCCTTTTCTTGATCAGCAGCTATAA 1581 47.94 MAMDPNPKRFPILSYVLARIPSLSPRSPRVETDIEQPASPMSRNAPHHSSHPSSSSPRIVDHMPHLSDPKLLASMTSAISDVAKTRSVLKNLGERPDHEAVDTANAKLADVESKLSAKLQEIVLSSRPADVELLEWRAHLAQQENECREAADKEKQVYKAIVQLDAMHEAYEKMLKEAEERLVKIYESAERGLPEEQRLDPVNEEVNDDVARILQEANEKQIDRVSLSGRRLRFLPEEFGRIRGLVVLDISCNQLKIIPDSISGLENLEEMNASSNLLGTLPDSIGLLQKLKLLNVSGNKLHALPDTICQCRSLVELDVSFNSLTYLPTNIGHELVNLQKLAIQLNKIRSLPSSVCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLSSNFTDLNELPQTFGDLSSLRELDLSNNQIHSLPDTFGHLENLKKLNLEQNPLETPPMEVVNKGPDAVRTFMSKRWLEILEEEDRKRTLAVEEQGQTGWLTRSTSWVKTYVSGVTETVSGIVGSPKSPKDPFLDQQL 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 342282 345428 - CmaCh11G000700.1 Cma11g00070 302579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00070 526 Coils Coil 161 188 - -
Cma11g00070 526 Gene3D Ribonuclease Inhibitor 175 469 IPR032675 -
Cma11g00070 526 Coils Coil 203 223 - -
Cma11g00070 526 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 510 - -
Cma11g00070 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 510 - -
Cma11g00070 526 SMART LRR_bac_2 406 425 - -
Cma11g00070 526 SMART LRR_bac_2 358 377 - -
Cma11g00070 526 SMART LRR_bac_2 311 330 - -
Cma11g00070 526 SMART LRR_bac_2 335 354 - -
Cma11g00070 526 SMART LRR_bac_2 381 402 - -
Cma11g00070 526 SMART LRR_bac_2 288 307 - -
Cma11g00070 526 SMART LRR_bac_2 265 284 - -
Cma11g00070 526 SMART LRR_bac_2 244 261 - -
Cma11g00070 526 MobiDBLite consensus disorder prediction 37 57 - -
Cma11g00070 526 PRINTS Leucine-rich repeat signature 314 327 - -
Cma11g00070 526 PRINTS Leucine-rich repeat signature 406 419 - -
Cma11g00070 526 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Cma11g00070 526 Pfam Leucine rich repeat 400 442 IPR001611 GO:0005515
Cma11g00070 526 Pfam Leucine rich repeat 224 278 IPR001611 GO:0005515
Cma11g00070 526 MobiDBLite consensus disorder prediction 24 64 - -
Cma11g00070 526 Coils Coil 101 121 - -
Cma11g00070 526 Coils Coil 133 153 - -
Cma11g00070 526 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Cma11g00070 526 SUPERFAMILY L domain-like 218 443 - -
Cma11g00070 526 SMART LRR_typ_2 288 311 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 381 405 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 265 287 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 312 334 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 406 428 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 358 380 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 429 452 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 335 357 IPR003591 -
Cma11g00070 526 SMART LRR_typ_2 242 264 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00070 - - - csv:101222309 884.019
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00093 Cma11g00070 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00070 Cma-Chr11:342282 Cma18g00766 Cma-Chr18:6818649 4.79E-148 dispersed
Cma10g00093 Cma-Chr10:377698 Cma11g00070 Cma-Chr11:342282 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00070 Cma_Chr11 FPKM 19.071301 18.80521 10.698129 11.292655 7.538107 7.459086 6.335787 8.684367 7.846305 6.274439