Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00075 ATGACTTTCGACTATGACCCTCCCAGAGTTCTTCGTCTCAATTCTCTGTGTTTTCTCTCTTCTTCAATCCGCAAGTGGAGTCGTCGACCGGGCGGCGGCGAAGAGAGGGTGGCTATGGCGGATGATACTTACGGTGGCGCTTCACTTCCGTCAGGTCCTGACGGCCGGAAACGTCGAGTGACCTACTTCTATGAGCCCACAATTGGTGATTACTATTACGGCCAAGGTCATCCGATGAAACCTCACCGTATTCGCATGGCCCATAACCTCATCGTTCACTACGGCCTCCACCGTCGGATGGAGATCAACCGGCCTTACCCTGCCGGTACGGAGGATATCCAGAGATTCCACTCCGATGACTATGTCGATTTCCTCGCCTCCGTGTCGCCCGAAACGCTGTCAGATCACTCCTTCTCTCGCTATCTCAAGCGCTTTAATGTTGGTGAGGACTGCCCTGTTTTTGATGGCTTATTCGGCTTCTGCCAGGCCTCTGCTGGCGGTTCCATTGGTGCTGCCGTCAAGCTCAATCGTGGCGATGCTGATATTGCTATCAATTGGGCTGGTGGGCTTCATCACGCTAAGAAGTCTGAGGCCTCCGGTTTCTGTTACGTCAATGATATTGTATTGGGCATCCTTGAGCTGCTGAAGTATCACAAGCGTGTACTATACATTGACATTGACGTCCATCATGGTGATGGCGTGGAGGAGGCATTTTATACTACTGACAGAGTAATGACGGTCTCCTTTCATAAATTTGGGGATTTTTTTCCTGGGACAGGGCACATTAAGGATGTTGGAGTAGGGTCTGGTAAAAACTATGCCCTTAATGTCCCCCTAAATGATGGGATGGATGATGACAGTTTTCGTGGTCTGTTTAGGCCACTCATTCAGAAAGTTATGGAGGTGTATCAGCCTGATGCGGTTGTACTCCAATGTGGAGCTGATTCATTAGCTGGTGATAGGTTGGGGTGCTTCAACTTATCTGTGAAGGGCCATGCAGATTGTCTTCGTTTCTTGAGGTCGTTTAACGTTCCTTTAATGGTGTTAGGCGGAGGAGGATATACTATCCGCAATGTCGCTCGCTGTTGGTGTTACGAGACAGCAGTTGCTGTTGGAGTTGAACCAGACAACAAATTGCCTTACAACGAGTATTTCGAGTATTTTGGACCTGATTATACTCTTCATATAGAACCATCCAACATGGAGAATCTAAATTCCCCTAAAGACATGGAAAAGATAAGGAACACCCTGCTGGAGCAACTCTCTCGACTCCCACATGCCCCCAGTGTACCTTTCCAGATGACTCCTTCCTCAGAAGTTCCAGAAGAGGTGGAAGAGAACATGGAACGTAGACCCAAACGCCGCATCTGGAATGGTGAGGATTATGATTCTGATGCTGAAGAAAACAGAAAGCGACCAAATAACAGTGAAGGGCCTGGTGTAAATAATCTGACGAGGTAA 1461 48.46 MTFDYDPPRVLRLNSLCFLSSSIRKWSRRPGGGEERVAMADDTYGGASLPSGPDGRKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEINRPYPAGTEDIQRFHSDDYVDFLASVSPETLSDHSFSRYLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGSGKNYALNVPLNDGMDDDSFRGLFRPLIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHIEPSNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEVPEEVEENMERRPKRRIWNGEDYDSDAEENRKRPNNSEGPGVNNLTR 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 365637 369286 + CmaCh11G000750.1 Cma11g00075 302584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00075 486 MobiDBLite consensus disorder prediction 426 486 - -
Cma11g00075 486 Pfam Histone deacetylase domain 77 368 IPR023801 -
Cma11g00075 486 SUPERFAMILY Arginase/deacetylase 58 423 IPR023696 -
Cma11g00075 486 PANTHER HISTONE DEACETYLASE 44 482 - -
Cma11g00075 486 CDD HDAC_classI 63 370 - -
Cma11g00075 486 Gene3D Histone deacetylase domain 56 431 IPR037138 -
Cma11g00075 486 PRINTS Histone deacetylase superfamily signature 220 235 IPR000286 -
Cma11g00075 486 PRINTS Histone deacetylase superfamily signature 305 315 IPR000286 -
Cma11g00075 486 PRINTS Histone deacetylase superfamily signature 188 211 IPR000286 -
Cma11g00075 486 MobiDBLite consensus disorder prediction 443 474 - -
Cma11g00075 486 PANTHER HISTONE DEACETYLASE 44 482 - -
Cma11g00075 486 PIRSF HDAC_I_euk 38 483 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 283 301 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 79 96 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 207 223 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 166 186 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 112 130 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 266 279 IPR003084 GO:0004407|GO:0016575
Cma11g00075 486 PRINTS Histone deacetylase signature 145 162 IPR003084 GO:0004407|GO:0016575
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00075 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101204443 896.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00075 Cma-Chr11:365637 Cma20g00695 Cma-Chr20:3184059 0 dispersed
Cma11g00890 Cma-Chr11:4539408 Cma11g00075 Cma-Chr11:365637 3.24E-24 transposed
Cma03g01104 Cma-Chr3:7537313 Cma11g00075 Cma-Chr11:365637 4.21E-18 transposed
Cma10g00102 Cma-Chr10:417113 Cma11g00075 Cma-Chr11:365637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g652 . . . Bda15g00620 Bpe12g00526 . . . . . . Cma11g00075 . . Sed08g0265 . . Bhi02g00691 Tan09g2049 Cmetu02g2011 . . . . Cla06g01544 Cam06g1704 . Cco06g1765 Clacu06g1671 Cmu06g1617 Cre06g2430 . Cone16ag0204 . . . . . . . . . . . . . . . . . . . . . . Cpe18g00702 . . . . . . . . . . . . . . Lsi06g01419 Csa01g00287 Chy02g02448 Cme02g01835
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00075 Cma_Chr11 FPKM 16.238878 16.749069 22.827341 20.77828 13.493241 10.572047 11.899802 49.854355 48.947414 51.816143