Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00077 ATGATTATTGATATTGATGTTCTTACTTTGATTTGGTTAAGGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTTGACCTAATTCGGTATGCATACAACGAGATCCCTGATGGTGGAGCGAGTCATGTGGTTCAGCCAATCCCCGCCCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGGGGAAGGGATGACAATATTTGA 615 45.85 MIIDIDVLTLIWLRKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDGGASHVVQPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGNNINEGGRDDNI 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 374968 375582 + CmaCh11G000770.1 Cma11g00077 302586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00077 204 PANTHER ELONGATED PETIOLULE 1 16 203 - -
Cma11g00077 204 MobiDBLite consensus disorder prediction 186 204 - -
Cma11g00077 204 Pfam Lateral organ boundaries (LOB) domain 25 121 IPR004883 -
Cma11g00077 204 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Cma11g00077 204 Coils Coil 104 124 - -
Cma11g00077 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 203 - -
Cma11g00077 204 MobiDBLite consensus disorder prediction 182 204 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00077 Cma13g00866 CCT
Cma11g00077 Cma18g00185 CCT
Cma11g00077 Cma13g00866 ECH
Cma11g00077 Cma18g00185 ECH
Cma10g00105 Cma11g00077 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02687 Cma-Chr4:18208584 Cma11g00077 Cma-Chr11:374968 7.81E-69 dispersed
Cma11g00077 Cma-Chr11:374968 Cma20g01123 Cma-Chr20:8866401 1.01E-49 dispersed
Cma05g00742 Cma-Chr5:4237544 Cma11g00077 Cma-Chr11:374968 1.12E-58 transposed
Cma10g00105 Cma-Chr10:429384 Cma11g00077 Cma-Chr11:374968 1.41E-116 wgd
Cma11g00077 Cma-Chr11:374968 Cma11g01450 Cma-Chr11:9563056 1.59E-66 wgd
Cma11g00077 Cma-Chr11:374968 Cma13g00866 Cma-Chr13:7097857 1.19E-61 wgd
Cma11g00077 Cma-Chr11:374968 Cma18g00185 Cma-Chr18:954033 1.38E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35771 PF03195 LOB 7.00E-42 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00077 - - cmos:111438177 390.963