Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00078 ATGGAACGAGCAATGGGCAGAGTAATCAAAGTGATTTCACTTAAGCATTTCTTCGTGCTGTCCATGGCTTTGAACGTCAGCTTGATTCTAAGAGCTATAAATCAGGATAACAGAGCTCCAATGGCAGTTCAGAAGGGAATTAACGCTGCCCAAATGACATTTTTGTCCTTCCCTTTGCTGTCATCGCCAACAGCCGCCGCTCCTGCAACTCAACCTCTTGGTCAAAATGGAAGAGAAAGAGTTATAAACCTTGACCATGGTGACCCGACAATGTATGAGAAATATTGGAAGCAAATGGGGGACAAGGCCACAATCGTGATCCCTGGATGGCAATCAATGAGTTATTTCTCTGATGTGAAGAACCTGTGTTGGTTCTTGGAGCCTGAATTTGCCAAGCAAATTGTGAGGCTGCATAAGGTGGTTGGTAACGCCCTGACAGAGGGTCGACACATTGTTGTCGGGACGGGCTCGTCCCAGCTCTTCTCAGCTGCACTCTATGCGTTGGCCCCGCAAGATGCGTCGAACCCCATCAGCGTGGTCTCTGCAGCCCCATACTACTCGTGTTACCCTTTGATGACCGACAGCATCAAGTCAGGGCTCCACAAATGGGCTGGCGATGCGAAGGTATTCAACAAGGACGAGCCCTACGTTGAATTGGTCACCTCCCCCAACAATCCTGATGGCTTCGTTCGACATTCCATGGTGAATAGAACTGGTGGTATATTGGTTCATGACCTTGCTTATTATTGGCCGCAATATACGCCTATATCGTCCCCGGCTGACAACGACTTGACGCTCTTCACTGTCTCAAAGATTACTGGTCATGCTGGAATGCGCATTGGGTGGGCTCTTGTGAAGGATGTTGAAGTTGCTAAGAAAATGACCAAATTCATTGAGCTGAATACCATTGGTGTGTCTAAGGACTCGCAGATTCGAGCTGCTAAAGTTCTCGAAGTAGTGTCCGATAGTTGCGAACAGGCCGGTGGTTCTGAACATGTCGAATCGTTCTTCCATTTCAGCCACGCCCTCATGACTGAGCGATGGAGGATGCTAAGGGAGGCAGTGAAACGTAGTGGCATATTTACATTCGCGTGGTTAAAATGCGATGGAGATGACGTCCATGATTGCGAGAGCTTCCTCCGACGCCATAAGATCCTCACACGAGGTGGGAAGCATTTCGGTGTGAGCCCGAAATACGTCCGAATTAGCATGATGGATCGTGAAGAAACCTATGATTTATTCATACAAAGATTGTCGCAGATCAGATTCCGGGCCTTCCGATGGGCCCAGTTTCTACCCGTAATTGGAGCCCAGCTCATGTACAAACCTGCATTGCCATTGGATATGTCGCCTCAAAAGCTGTACAGCCCAACGGATTCCTTGGCTGAAAACGACTGCACTGATGGTGAGATGGAACCAAACTTCCACTCAAGAATGCATTTTGAGCTTCTTTCCGGCGACCTGCTGTGA 1470 48.57 MERAMGRVIKVISLKHFFVLSMALNVSLILRAINQDNRAPMAVQKGINAAQMTFLSFPLLSSPTAAAPATQPLGQNGRERVINLDHGDPTMYEKYWKQMGDKATIVIPGWQSMSYFSDVKNLCWFLEPEFAKQIVRLHKVVGNALTEGRHIVVGTGSSQLFSAALYALAPQDASNPISVVSAAPYYSCYPLMTDSIKSGLHKWAGDAKVFNKDEPYVELVTSPNNPDGFVRHSMVNRTGGILVHDLAYYWPQYTPISSPADNDLTLFTVSKITGHAGMRIGWALVKDVEVAKKMTKFIELNTIGVSKDSQIRAAKVLEVVSDSCEQAGGSEHVESFFHFSHALMTERWRMLREAVKRSGIFTFAWLKCDGDDVHDCESFLRRHKILTRGGKHFGVSPKYVRISMMDREETYDLFIQRLSQIRFRAFRWAQFLPVIGAQLMYKPALPLDMSPQKLYSPTDSLAENDCTDGEMEPNFHSRMHFELLSGDLL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 378903 386437 - CmaCh11G000780.1 Cma11g00078 302587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00078 489 Pfam Allinase 82 362 IPR006948 GO:0016846
Cma11g00078 489 Gene3D Aspartate Aminotransferase, domain 1 362 426 IPR015422 GO:0003824
Cma11g00078 489 SUPERFAMILY PLP-dependent transferases 75 421 IPR015424 -
Cma11g00078 489 CDD AAT_like 128 420 - -
Cma11g00078 489 Gene3D - 72 122 IPR037029 GO:0016846
Cma11g00078 489 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 9 422 - -
Cma11g00078 489 Gene3D - 127 330 IPR015421 GO:0003824
Cma11g00078 489 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 9 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00078 K16903 TAA1; L-tryptophan---pyruvate aminotransferase [EC:2.6.1.99] - csv:101206363 677.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00078 Cma13g00868 CCT
Cma11g00078 Cma18g00184 CCT
Cma10g00108 Cma11g00078 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00108 Cma-Chr10:441060 Cma11g00078 Cma-Chr11:378903 0 dispersed
Cma11g00078 Cma-Chr11:378903 Cma12g00031 Cma-Chr12:114723 3.76E-122 dispersed
Cma11g00078 Cma-Chr11:378903 Cma13g00868 Cma-Chr13:7102190 1.23E-168 wgd
Cma11g00078 Cma-Chr11:378903 Cma18g00184 Cma-Chr18:947225 1.64E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g800 . . . Bda15g00547 Bpe12g00664 . . Bma12g01048 Cmo13g00900 Cmo18g00143 Cma10g00108 Cma11g00078 Car10g00097 Car11g00072 . Cpe20g00257 . Bhi02g00498 Tan09g2287 . . . . . Cla06g01686 Cam06g1872 Cec06g1921 Cco06g1926 Clacu06g1827 Cmu06g1770 Cre06g2586 Cone2ag0925 . . . . Csa01g00873 Chy12g01249 Cme12g01672 Blo13g00133 Blo15g00257 . . Bpe07g00854 . . Bma08g00089 Sed08g2528 Cmo10g00112 Cmo11g00080 Cma13g00868 Cma18g00184 Car13g00711 Car18g00175 Cpe09g01012 Cpe18g00857 Bhi08g01648 Tan05g1981 Cmetu12g0383 Lac10g0479 Hepe07g2207 . . Cla01g01321 Cam01g1409 Cec01g1440 Cco01g1485 Clacu01g1386 Cmu01g1295 Cre01g1246 Lsi06g01579 Csa01g00125 Chy02g02602 Cme02g01999
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001450 1 3 2 3 2 2 4 2 2 3 2 2 4 3 3 4 2 1 3 2 2 2 2 2 2 1 2 4 3 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00078 Cma_Chr11 FPKM 5.543492 6.20894 4.76948 4.077008 2.371479 3.156193 2.722418 0.0 0.197924 0.068254