Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00082 ATGGAGAACAAGGTGGAAGATTCAATTCGTGCGAAGATGGAGTCCCTTCGAATGGTTCGTGAAAAGGAAATTCCATTCCAGCTGGAAAAGATGGAGTCCTTCGCCGATTCATTTCGCAAGTCTCTGGAATCGATCTCTGCAAAGTCGCAAGAGAATGCCCTAAGTCAAGTGAAACTGGGAGAACTAAAGGCGAGGCTGAGGGAGGCGGAAGATGAATTGGTTAAAGCTCTAGCAGTGAAGACTCGCAAAGAGGCCAAACGGCTGGCAATCACAGACTCCCTTGCAGCTTCAAGATCTAGAATCGAGAAGCTCAGGAATACTTTACAAGATTGTAAAGCGAAGAGGGATAAATATTCTAACATTATATCTCAGCAATCCTTGGCTTTATCTTCTTCTGAACACAAGGAAACCCAAGAAAGCGATTGCAGAAGTGATTTACAAGAGGCTATTTCTTGGTACAATAGAGTTTTGGGTTTTCATATTGAAGGAGGACATGGGGTAACATTTTCTTTCAAGAAAATCATTAAGGACAATCCTGATAAAGAATATTCTTTTACCATTCGTCATGCAAATGATACTTATACATTGTTAGATTGTACCCCATCCTTGCGAGATATTAAAGGATTGATTCATGAATTGAATGAAACAAATGGTTTATTCAAGTTCGTTAAGGTCATGAGACGGAGGTTCCAAGAGGCTGCAGCAGAAGGAGTTGGAGCCGAAGCATTGTCTCTGCATCAAGACTCAACGATGATATCTTTGTCAGCTCCTGGTTTGTCATCATCAACTGACGGAAGTGAATCTTCAACTCAAGAAATTGATAACCATGTTCAACCTGAGGAAACTAACAATCGTTCTAAGAAATTTTTACCTGGAAATAAACCAGGTATCCAATCCCCTGGATCTGCCTTTTCTTTGCGTCGATCTCCTCGTTTTCAGGATGATGATTTTGGAGGCGACTTCACTGGAACGCACAACAATAGGCATTCAGGAAATAAGAGAGGTTTTGGCGATCTCGAAGATGAAGAGGATGACTTATTTGGTTCCAAAAAGGCTAACGCTAAAGTCGAAGAAACTGCTCCAGGTGTAGCGACAGGAATGATTCTGTCACTTCGTGAGAGTCTTAAAAGCTATGAGGACACACTCACAACATGCCGGACAGAGCTTGAAATTGCCAAGTCTGAGATTCAGAAGTGGATTACTTCATTTCAGAATGAAAATTTCATTCCTGCTGGTGCTTCCCCTGAACCTAAATTTGTGATCAGCTTTCTGCAATCCCTGAAGTTCTCGGAGGAGTCTCTAAGAGACCAGCTAGAAAAGGCAAAGAAGAAGGAAGCAGCTTTTATTGTTACATTTGCTAAACGAGAGCAGGAGATTGCAGAGTTGAAGGCAAGCTGCAGTCCGGGACTTGAAAGCACAGTTGAAGCCACCATCCATGCAGTTTTTCCTTATATGAATAATGTTCGAAGCAAGATATTGAGTTGCTTGTATATGCTAGAGTTGATTGTGAGGAGAAAGGCTAGAAGATTATTGATAGATCCTGCAATACATGAAGAGTTTACTCGTCTGAAGAGTTTGGTTGAGGAGAAAGACAAAAAGGTTAAGGAGCTGCAAGATAACATTGCCGCAGTAAGTTTTACTCCATCAAGCAAGATGGGTAAAATGCTGATGGCTAAATGTAGGACTCTGCAAGAGGAAAATGAAGAGATAGGAAATCAAGCTGCTGAAGGAAAGATGCATGAGTTAGGAATAAAGCTTGCGGTGCAGAAATCTCAAAATACGGAACTTAGAAATCATTACGAAGCCTTACAGAAACATATGGAGGGGCTGACAAATGACGTTGAAAGGTCAAACGAATTGGCTATCGTGTTGCAAGAGAAGCTTGCAGAGAAGGATCGGGAGCTTCAAAGCTTCAAGGAAGCTTTACAGCAGTCGAAGAGTCCAACGGTCGAGAATAAAGTTGATTCACCCCCTGCCGAGAAGCCACCCAAAGATGAGGTGGTTATTTCCGGCGATGCTGAAAGCTGA 2028 42.16 MENKVEDSIRAKMESLRMVREKEIPFQLEKMESFADSFRKSLESISAKSQENALSQVKLGELKARLREAEDELVKALAVKTRKEAKRLAITDSLAASRSRIEKLRNTLQDCKAKRDKYSNIISQQSLALSSSEHKETQESDCRSDLQEAISWYNRVLGFHIEGGHGVTFSFKKIIKDNPDKEYSFTIRHANDTYTLLDCTPSLRDIKGLIHELNETNGLFKFVKVMRRRFQEAAAEGVGAEALSLHQDSTMISLSAPGLSSSTDGSESSTQEIDNHVQPEETNNRSKKFLPGNKPGIQSPGSAFSLRRSPRFQDDDFGGDFTGTHNNRHSGNKRGFGDLEDEEDDLFGSKKANAKVEETAPGVATGMILSLRESLKSYEDTLTTCRTELEIAKSEIQKWITSFQNENFIPAGASPEPKFVISFLQSLKFSEESLRDQLEKAKKKEAAFIVTFAKREQEIAELKASCSPGLESTVEATIHAVFPYMNNVRSKILSCLYMLELIVRRKARRLLIDPAIHEEFTRLKSLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIGNQAAEGKMHELGIKLAVQKSQNTELRNHYEALQKHMEGLTNDVERSNELAIVLQEKLAEKDRELQSFKEALQQSKSPTVENKVDSPPAEKPPKDEVVISGDAES 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 395564 403821 - CmaCh11G000820.1 Cma11g00082 302591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00082 675 Coils Coil 375 395 - -
Cma11g00082 675 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 309 465 - -
Cma11g00082 675 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 506 647 - -
Cma11g00082 675 Coils Coil 520 540 - -
Cma11g00082 675 Coils Coil 593 641 - -
Cma11g00082 675 Pfam Chromosome segregation protein Spc25 163 231 IPR013255 GO:0007059|GO:0031262
Cma11g00082 675 Gene3D Chromosome segregation protein Spc25 139 236 - -
Cma11g00082 675 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 506 647 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cma11g00082 675 MobiDBLite consensus disorder prediction 640 675 - -
Cma11g00082 675 Pfam WTAP/Mum2p family 440 619 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cma11g00082 675 MobiDBLite consensus disorder prediction 254 277 - -
Cma11g00082 675 Coils Coil 94 121 - -
Cma11g00082 675 MobiDBLite consensus disorder prediction 254 338 - -
Cma11g00082 675 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 309 465 IPR033757 GO:0000381|GO:0005634|GO:0080009
Cma11g00082 675 Coils Coil 424 444 - -
Cma11g00082 675 MobiDBLite consensus disorder prediction 657 675 - -
Cma11g00082 675 Coils Coil 52 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00082 K22824 WTAP; pre-mRNA-splicing regulator WTAP - csv:101204933 500.745
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00110 Cma11g00082 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00112 Cma-Chr10:471861 Cma11g00082 Cma-Chr11:395564 8.69E-150 transposed
Cma10g00110 Cma-Chr10:455708 Cma11g00082 Cma-Chr11:395564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g796 . . Bda06g00611 . . . . Bma12g01046 . . Cma10g00110 Cma11g00082 Car10g00099 Car11g00075 Sed08g0092 . Cpe04g01570 Bhi02g00492 Tan09g2284 Cmetu02g1221 . Hepe09g0221 . . Cla06g01683 Cam06g1870 Cec06g1919 Cco06g1924 Clacu06g1825 Cmu06g1768 Cre06g2584 . . Cone13ag0158 Cone19ag0157 . . . . . Blo15g00260 . . Bpe07g00852 . . . . Cmo10g00114 Cmo11g00082 . . . . . Cpe18g00855 . . . . . . . . . . . . . . Lsi06g01575 Csa01g00127 . Cme02g01996
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008893 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00082 Cma_Chr11 FPKM 3.155305 3.83003 1.835502 2.982158 10.797989 8.454772 11.102198 3.928604 3.421178 3.876785