Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00084 ATGGCAGACCCAACAGGTTCATCAGCTTCAGATAAGGCTCATGCATCCTCTCATTCTTCATCGGACCAGCAAAACACTAAACGGGATTTTTCCACTGCAATTTTGGAACGCAAGAAGTCTCCAAATCGTTTAGTTGTCGATGAGGGTATCAATGATGATAACTCTGTGGTTTCTTTGCATCCTGCTACCATGGAAAAGCTGCAGTTCTTTAGAAGAGATACTATTTTATTGAAGGGGAAGAAGCGCAGAGATACAGTGTGCGTTGTTCTTTCCGATGAGCAATGTGAAGAGCCAAAAATCAGAATGAATAAAATTGTACGAGCCAATCTCAGAGTTCGTCTTGGAGATGTTGTATCTGTCCATCAGTGTCCAGATGTGAAGTACGGAAAGCGGGTTCACATCCTCCCTGTTGATGATACAATCGAGGGTGTTGCTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCCGTTAGGAAGGGTGACCTGTTCTTAGTCAGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAGACAGACCCTGGTGAATACTGCGTTGTTGCACCTGATACCGAGATCTTCTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTCGGATATGATGATGTTGGAGGAGTTAGGAAGCAAATGGCTCAGATCCGTGAATTAGTGGAATTACCACTTAGACATCCACAACTTTTCAAATCGATTGGCGTAAAGCCTCCGAAAGGGATATTGCTGTATGGGCCTCCTGGATCTGGAAAAACTCTTATAGCCAGAGCTGTTGCTAATGAGACGGGTGCATTTTTCTTTCTGATTAATGGTCCAGAAATAATGTCGAAGTTAGCTGGTGAGAGTGAAAGCAATCTAAGGAAGGCGTTTGAGGAAGCTGAAAAGAATGCCCCTTCAATTATATTTATCGATGAACTTGATTCCATTGCTCCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGGCGTATCGTATCCCAACTTCTTACCTTGATGGATGGCCTCAAAACTCGAGTACATGTTATTGTTATTGGAGCAACGAACAGACCCAACAGCATTGACCCTGCTTTGAGGAGATTTGGAAGATTTGATCGAGAGATTGATATTGGTGTTCCTGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCCGAGGATGTGGATCTTGAGAGAGTTGCACGGGATACTCATGGTTATGTTGGTGCTGATCTCGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTCGCGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATTGATGCTGAGGTTTTGAATTCCATGGCTGTAACTAATGAACATTTCCAAACTGCTTTAGGGTCTTCAAATCCTTCGGCGTTGCGGGAAACTGTCGTGGAGGTTCCGAATGTTTCGTGGGATGATATCGGTGGGTTGGAAAATGTTAAAAGAGAGCTGCAGGAGACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTCCTCTTTTATGGGCCCCCGGGCTGTGGTAAGACGCTGCTGGCTAAGGCAATTGCCAATGAATGTCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTGCTGACAATGTGGTTCGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATCGCAACTCAGCGTGGTAGTTCTGTTGGAGATGCTGGTGGTGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCAAAGAAGACCGTGTTTATAATTGGGGCGACAAACAGGCCAGACATTATAGACCCGGCACTTCTCAGGCCGGGACGTCTGGACCAACTAATATACATCCCGCTCCCTGACGAGTCTTCACGTCTTCAAATTTTCAAAGCATGTCTCCGAAAGTCGCCAGTGTCAAAAGATGTCAATCTATCAGCTCTTTCACGGTACACCCATGGCTTTAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATCGAGAAGGATCTTGAGAGGGAGAGAAAGGAAAGAGAAAACCCAGAAGCCATGGAGGAAGACGACATCGACGAAGTCTCAGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGTAGAAGTGTCAGCGATGCAGACATCAGGAAGTACCAGCTGTTTGCTCAGACCCTACAGCAATCTCGTGGGATCAGATCGGAATTTCGGTTCCCTGATCGAACCGACAACGTAACTGCAGGAGCGGCTGACCCGTTTTCTTCCGCTGTAGCCGCTGGAGATGATGATGATCTTTACAGCTGA 2463 45.11 MADPTGSSASDKAHASSHSSSDQQNTKRDFSTAILERKKSPNRLVVDEGINDDNSVVSLHPATMEKLQFFRRDTILLKGKKRRDTVCVVLSDEQCEEPKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVAGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRVHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVSKDVNLSALSRYTHGFSGADITEICQRACKYAIRENIEKDLERERKERENPEAMEEDDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIRSEFRFPDRTDNVTAGAADPFSSAVAAGDDDDLYS 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 409017 413998 - CmaCh11G000840.1 Cma11g00084 302593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00084 820 SUPERFAMILY Cdc48 domain 2-like 125 217 IPR029067 -
Cma11g00084 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 777 IPR027417 -
Cma11g00084 820 SMART CDC48_2_2 143 209 IPR004201 -
Cma11g00084 820 Pfam AAA+ lid domain 686 725 IPR041569 -
Cma11g00084 820 Pfam AAA+ lid domain 410 452 IPR041569 -
Cma11g00084 820 CDD AAA 497 664 - -
Cma11g00084 820 Pfam ATPase family associated with various cellular activities (AAA) 258 387 IPR003959 GO:0005524|GO:0016887
Cma11g00084 820 Pfam ATPase family associated with various cellular activities (AAA) 531 664 IPR003959 GO:0005524|GO:0016887
Cma11g00084 820 MobiDBLite consensus disorder prediction 796 820 - -
Cma11g00084 820 ProSitePatterns AAA-protein family signature. 634 652 IPR003960 GO:0005524|GO:0016887
Cma11g00084 820 SUPERFAMILY ADC-like 39 123 IPR009010 -
Cma11g00084 820 MobiDBLite consensus disorder prediction 1 31 - -
Cma11g00084 820 Gene3D - 668 776 - -
Cma11g00084 820 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 18 794 - -
Cma11g00084 820 Gene3D - 223 387 IPR027417 -
Cma11g00084 820 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 54 780 IPR005938 GO:0016787
Cma11g00084 820 MobiDBLite consensus disorder prediction 1 30 - -
Cma11g00084 820 SMART CDC48_N_2 43 126 IPR003338 -
Cma11g00084 820 Pfam Cell division protein 48 (CDC48), N-terminal domain 43 124 IPR003338 -
Cma11g00084 820 Pfam Cell division protein 48 (CDC48), domain 2 146 208 IPR004201 -
Cma11g00084 820 CDD AAA 224 387 - -
Cma11g00084 820 Gene3D - 389 480 - -
Cma11g00084 820 SMART AAA_5 527 666 IPR003593 -
Cma11g00084 820 SMART AAA_5 254 390 IPR003593 -
Cma11g00084 820 Gene3D - 126 222 - -
Cma11g00084 820 PANTHER AAA-FAMILY ATPASE 18 794 - -
Cma11g00084 820 Gene3D - 20 125 - -
Cma11g00084 820 Gene3D - 481 664 IPR027417 -
Cma11g00084 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 479 IPR027417 -
Cma11g00084 820 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00084 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1531.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01216 Cma-Chr3:8075269 Cma11g00084 Cma-Chr11:409017 0 dispersed
Cma07g00902 Cma-Chr7:4262066 Cma11g00084 Cma-Chr11:409017 0 dispersed
Cma11g00084 Cma-Chr11:409017 Cma14g00218 Cma-Chr14:939721 0 dispersed
Cma18g00534 Cma-Chr18:3377396 Cma11g00084 Cma-Chr11:409017 4.52E-47 dispersed
Cma18g00597 Cma-Chr18:5325732 Cma11g00084 Cma-Chr11:409017 6.90E-42 dispersed
Cma11g00084 Cma-Chr11:409017 Cma06g00387 Cma-Chr6:1793079 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00084 Cma_Chr11 FPKM 4.551669 4.613994 33.278275 29.659128 5.387278 5.099185 5.672917 68.812508 65.919182 65.280983