Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00088 ATGACGTCAAGTATGTTGACTGGAGAAAGGAGGTGGACATCAACCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCAGTTCCAAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAATCATGGTTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCTCATCAGTTTCTCCAAATACAGAAAGTGCTTCTAGTTCGCCAAGCCATCTCTGTGGCCGCCCTTCATCTGCTGGTGGTGGCACTCGTCCATCAACTGCTGGTAGTGACAGGTCCCTTGAACCTCATGGTAATGCGTGGGGCCCAAGTTCTAGACCATCATCTGCCTCTGGGCCTGTGACGTTAAATCATGCATCACTCGCATCCTTACGACCTCAGAGTGCAGAAACTAAGTCTAGTAGTTCACAATTGTCTCGATTTGCGGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGGAACAATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCTGGAGATTTTCCTACGCTGGGTTCGGAAAAAGAATGTGTAGGAAAGGGTGCCGAGTCACAAGATAATATGCCCAATGGAGGAGCAACAATGAAAGAGACGACTGGAACTTCGGCAATGGATGATCCTGAAAATGTAACTGCAAGTGTTTATACCTTGAGAAGTGATAATCTTCCGCACAACGATGAGGGATCTAGGCCAAATGCAGAGAAATGGGTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACGTTATGATGGCTGGCATGGATCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCTCCATATAGAACTCCAGTTGCTCCTGGTAATTTCCCTATGGATCCATTTCTGTATTATCCTCAGATTCCCCCTGGTGGCCTTCCAAATCCCCACGCTCCTCATGGAACTGGACCCAGGGGTCCCCATCCTAATACTGGAGATATATACAGACCTCCTATGCATGATGGTTTTATTCACCCAGGTGTGTCAATTAGGCCTGGATTTTACCCAGGTCCAGTTACCTATGAGGGGTATTACCGTCCTCCCATGGGCTACTGTAATTCGAATGATAGAGACGCTCCATTTATGGGAATGCCTGCTGGGCCTGCTGGACCTGCTGGTTACAACAGGCACTTGGGCCAGGGCAAAAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCCAGTGGACATGGTTCTAGTGGAAAGGCTTTGGTTCCAGAACAAGTAGAACCTGATCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTGATGCAGCAGGGAAACTTGAATGGTAAGAACGAAGAAGAAGAAAATAGGGTAAACCCAACAAATACTAATCAGTTGATTCTTGAGAAGGCTGACCAACAGAGGGCGTCTCCATGGGAGAATGACTGGGATCATAAAAAGGAAGTTGATGTGAGGAAAAGAACATTTCGGGTGGAACCATTTGCTCAGGCTTCTGCCAGCCATAAAGCTCAATCTTCTGAAAATATCGAAGGGAAGTCCTGTGGAAGCATGAGGACTGGTGATGGTTTACTAGAAAAATCAGATGCTGCTGCTTCTGGTTTCTCTGAAGTTTCCAAATCACTGGCTCCTGCCACAAAAGATTCAAGTCTGATTCAGAAGATTGAGGGACTAAATGCCAAAGCCCGGGCTTCTGATGTGCGACATGATGATGCACCTATTTCCATCAGGGAGGAACCAAATGAGCTTCAATCTAAAGATAAGCACTCCGATCATTTTGTTGCCAATGAAGCTGGTGTGAGTACTGTTCTTCCTCAAAATAGGGATTTTAATGAAGTCATAGACCCTGCCTCCTGTGAATTGAGCTTGTCCACTGGTGATAGGAACGTTAAATTATACAGCGGAGCACCCGTTCACAGGAGGTCTAATCGTGGAATGCAAGGGAGAAATGATCATCATGGTCGAGGAAAAGTCAATACGCAAGAGGTTGAAGGGTGGCATAAAAAACCCATGTTGGACTCCCCAGGCATGATGGCTACTCCCCAGGAAAGTTCTGATCTTGCGAGAGACCACAGCGCTTTAGGGGCTATTGATAAGGCTGAGTCATTTCCTTCTGATAGCCATGGAGATGTACCTGCCCCATCCATAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGACGAGAGAGCTAGCAAAGCAACGCACCAAACAACTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAAGGCCAGGGCCTTCGCAAAACTTGAAGAGTTGAACAGGCGTACAGTAGCAGTGGAAGGGCCAACTCAGTGGTCTGAAAATGCATCTAATGATGCCATTAGAAATAAGATAGAAGAACCTCGAAATGGTAACCCAAGAACGATTGATATGATATCTGGAGAGCATAACACAGTTTCTGATCTGCACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTGACAAGAATTCTCCCATTGTATCAGAAAATACATCATCGAAGAATCAAAGTAGTGGCAATAAGGAAAAGGTTGTGGCACCTATTGAATCAAGACCTATTGAATCAAGACCTATTGAGCAGGATGCAGCTCAAAATAAGAACGTCTCTGAGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAGAAACCAAATACTCCATCTGACAAAACTGAAAAGCTTCCCCATTTAGTTAAGGAATCCAAAAGTCAGACCGTTGTTGCTGACATTCATTCAGTTGTAGAGGAGTCGAGCAATGTAGATCCTGTTGCTGAATCTTCGACACCTACAAGAAAGAAACATAACAAGACTGGGAAGAACAAGCACAAAGTGGAAGAGGCCTCAATATCTACATCATTACCTCAAGTTTCAAAAGAAGCAACTCCTACAACGGAATATGATAAACAAACGGCTTCTCAATCAGTAATGAATCCACCTTCAGATCCACAACTGCCCATTAATAGAGATGATAATCAGTTCAATTTGCAGCAACCTCTGTTGCCAGTTGTAGAGACATATGGCAAAGGTAATGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCGAGAAATGCACAAAATAAACCAGGAGAAAAAATCCACGGCGGTGATTCTGTTGTCTGGGCCCCAGTGCGATCTCTCAACAAATGTGAAGTTTCCATTGAAGCTGTTCAGAAGAATGAAGCTGAAGCTGTTGCTTCATCTGTAAAGATTGATAACCAAGTGCAGAATATACCAAAAAATAAGAGAGCTGAAAGGGAGATATACGTACCGAAGCCAGTAGCCAAAGAAATGGCACAGCAAGGAACCTTCCATCAAGATTTTTCGCCCATGAACCAGGCACCAGATGATAATAAGGCAGATTCGAGTTCTCAAAGCTCTGATAATACTCGATCCAGTGTTGCTGCTTCAGGTATGGGATTTTCCACAGACCACAGAAATGGGGATGGTAGGCACCATAAACAAAGCAAGGCACACGCCTCATGGCGGCAACGGGGAGCAACGGAATATGGGCAGGGTTTACAAGATCAATTATCTTATGCTTCAAATGCTGGTAGTTATGTTAAAAAATCAAGTGAGTATCAAGTACCTGAGAAGCCTGCTGGAAACTCCACCAATGAGTTCGTGAGTCAGATTGATGAGTGGGATCCACCTGAAGGGTGGAATGACCCCAACTACTCCGCCTCTATCCCACCTGTCACTGCAGTCCTTGGAAGAGACCAGGGAGTGACTGGCAGGGGAAAACGATCCCAATTTAAGGGTCACAAGGGTATTGGGAACAATTATGATCTAAATGAAAGGAAACTTAGAAGTGGAGACCACGAAAAAATTTCCTCTGAATCTTCGATGCCTGAAGTGGATCAAAAGGATGCACCAGCTGCTGCTAAAGAAAGTCGGGGTGTCGGGGAACGTTCGACATCTCATTGGCAACCCAAAACATGGATGGTTCAACCCCACAATCATCAAGGTAGCAAGGCTAGAGGTGATCAAAATGTTGATGCTGATGCTGCACAAACTAATAAAACGGGATCTAGTCTATCTTCACATGGCACAAAGACGAGTGATGGTGTGGCCCAAAATCATGAAGAGGGAGCAAGTGTTGGGCATCATGGGTTCGGGGGAGATAAGAAAATTTCTTCCCGTAAAGACCGTCCATACTCCCCAACTCAAGGTCCAATCCATAATGCAGAGGTTGCTCCAGCAAATTCAGATGTGAGACGCCAGCAACAGTTGCCTTCATTTTACCATAAAGGTAATGAGATCAATAACCGATTTGGAAGAGGGTCGGAGTCTCGTCGGGAAAGGAATTCGTTTCAATATCGTAAGCAGCAGCAGAATTTTCCACCTGCTAATAGGGACAGGCAAAGACAAAATTTGCAGTACGAGTACCAACCAGTTGGGCCACACAATGGAAAACCGAACATGGATAGACCTAAGGATAATACCACTCAGCATTCAGGATCAAGGTACATAGAGAGGGGCCAAGGCCAATCCAGAAGAGATGGTGGGAACTTTTACAAGCAAGAAGGTGGAGGACCAGTTTGA 4656 45.45 MTSSMLTGERRWTSTRRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSVSPNTESASSSPSHLCGRPSSAGGGTRPSTAGSDRSLEPHGNAWGPSSRPSSASGPVTLNHASLASLRPQSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMPCKSDGFSLTSGDFPTLGSEKECVGKGAESQDNMPNGGATMKETTGTSAMDDPENVTASVYTLRSDNLPHNDEGSRPNAEKWVGHPQPYPGANIPPPRYDGWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPQIPPGGLPNPHAPHGTGPRGPHPNTGDIYRPPMHDGFIHPGVSIRPGFYPGPVTYEGYYRPPMGYCNSNDRDAPFMGMPAGPAGPAGYNRHLGQGKSASEPASSHGLSSGHGSSGKALVPEQVEPDLPCDNQGPYKVLMQQGNLNGKNEEEENRVNPTNTNQLILEKADQQRASPWENDWDHKKEVDVRKRTFRVEPFAQASASHKAQSSENIEGKSCGSMRTGDGLLEKSDAAASGFSEVSKSLAPATKDSSLIQKIEGLNAKARASDVRHDDAPISIREEPNELQSKDKHSDHFVANEAGVSTVLPQNRDFNEVIDPASCELSLSTGDRNVKLYSGAPVHRRSNRGMQGRNDHHGRGKVNTQEVEGWHKKPMLDSPGMMATPQESSDLARDHSALGAIDKAESFPSDSHGDVPAPSIGDSKDSQAQRTKTRELAKQRTKQLQEEEEERTRKQKARAFAKLEELNRRTVAVEGPTQWSENASNDAIRNKIEEPRNGNPRTIDMISGEHNTVSDLHVVANNSESTMGTDKNSPIVSENTSSKNQSSGNKEKVVAPIESRPIESRPIEQDAAQNKNVSEVNGGGASLKHKRTGNKQKPNTPSDKTEKLPHLVKESKSQTVVADIHSVVEESSNVDPVAESSTPTRKKHNKTGKNKHKVEEASISTSLPQVSKEATPTTEYDKQTASQSVMNPPSDPQLPINRDDNQFNLQQPLLPVVETYGKGNGQWKSQHSRRMPRNAQNKPGEKIHGGDSVVWAPVRSLNKCEVSIEAVQKNEAEAVASSVKIDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTFHQDFSPMNQAPDDNKADSSSQSSDNTRSSVAASGMGFSTDHRNGDGRHHKQSKAHASWRQRGATEYGQGLQDQLSYASNAGSYVKKSSEYQVPEKPAGNSTNEFVSQIDEWDPPEGWNDPNYSASIPPVTAVLGRDQGVTGRGKRSQFKGHKGIGNNYDLNERKLRSGDHEKISSESSMPEVDQKDAPAAAKESRGVGERSTSHWQPKTWMVQPHNHQGSKARGDQNVDADAAQTNKTGSSLSSHGTKTSDGVAQNHEEGASVGHHGFGGDKKISSRKDRPYSPTQGPIHNAEVAPANSDVRRQQQLPSFYHKGNEINNRFGRGSESRRERNSFQYRKQQQNFPPANRDRQRQNLQYEYQPVGPHNGKPNMDRPKDNTTQHSGSRYIERGQGQSRRDGGNFYKQEGGGPV 1551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 425970 436747 + CmaCh11G000880.1 Cma11g00088 302597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1047 1074 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 420 435 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1477 1501 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 796 829 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1405 1420 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 841 875 - -
Cma11g00088 1551 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1545 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 919 936 - -
Cma11g00088 1551 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1545 IPR038808 -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 329 351 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1439 1454 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1118 1551 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 410 455 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1205 1227 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 750 779 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 119 163 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 841 1027 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 206 233 - -
Cma11g00088 1551 Pfam BAT2 N-terminus 12 137 IPR009738 -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 54 163 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1234 1248 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 588 614 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1341 1397 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 671 696 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 213 233 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 56 110 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 526 541 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1297 1320 - -
Cma11g00088 1551 Coils Coil 753 792 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 1139 1177 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 665 779 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 984 1027 - -
Cma11g00088 1551 MobiDBLite consensus disorder prediction 523 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00088 - - - mcha:111007408 2367.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00119 Cma11g00088 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00119 Cma-Chr10:508260 Cma11g00088 Cma-Chr11:425970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00088 Cma_Chr11 FPKM 18.418608 20.537878 18.788143 18.1574 16.368528 15.556863 16.905689 29.014629 26.168272 25.155682