Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00090 ATGGCGGATCTTTACGGACTCCATCCTCTCGCTGACTACTCCTACGAGTCCTCTTCAGCGGCTCCGTTGGACAACCTCCTTGTTCCGGTTAATTTTCAGGCCTATTCTACTGCTTCTGCAGACTATTCTCATTGGCTTCAGGTTTTTGGATCGGGACACGTACCGTCGGTGTCGTCGGGGGACTACGATGCCGCTTTGGCGGTTGTTTCCGAGGAGGAGTCTGCCGGTGCAATTAGAGAGAAAATTGCTTCTCATCCTCTTTACCCTAGACTTGTCGATGCGTTTGTTGACTGCCAAAAGATCGGTGCACCGCCGGAGGTCGCTAATATCCTAGGCAGAAGCGTTCGAGGAAGAGACATCGGCGAAAGAACTTCGGGCGTTTCAACTTGCTTGGGTGCCGATCCCGAGCTCGATGAGTTCATGGAAACCTACTGCGGGATACTGGCGAAGTACAAGCTGGATCTCTCCCTGCCCTTTGTTGAAGCATCTTCCTTCCTCAACAACATGGAAACGCAGTTAAGCAGTCTATGTAACGGCACCACCAGAGGCTACGTTTCCGATGAAACTGCTGCTGGTTCATCAGAAGAGGATGCAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCTGTGGGCGAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATCTTAGTAGCTTAAAGCAAGAATTTTCAAAAACTAAAAAGAAGGTAAAACTACCAAAAGAATCCAGACAGATCCTGCTTGACTGGTGGAACGTCCATTGCAAATGGCCTTACCCCACTGAGATGGACAAATTTGAGTTGGCGGAGTCGACAGGGCTTGACCCTAAACAAATTAACAACTGGTTCATAAACCAGAGAAAACGGCATTGGAAAGCATCGGAGAATATGCAATTTGGTGATGTGCATGGGAGCCTTGAGCCTTCCACTCACCTCTACCTGTTCAGCTCAGTCGTGAAATTTCATAATCCTTTCTCCTCGTTTTTGCTTGTGACCTCGTTGTTCTGTTCTGCCTGCGAAACTGAAGCAGTTGCTATGACTGTAGACAATATATTGTCCCACGCTTCTCTTGAATGGAAGTTCTCTCAAGTCTTCGGCGAACGAGGTGCCGGAGAGGATATTCAGGATGTTGATATCATATCTGCTATTGGATTCGATAAGAGTGGTGATAACCTTGCCATTGGCGATCGAGGTGGTCGTGTTATTATATTTGAAAGAAACGAAAGGAAGGATACTTCGAAAAATATCCTTACTCGGAATAAGTTGGAGCAGTTGAATCTTACTCCTGCATCTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAGATTAATAAAGTAAAGTGGTGCGTATCACCCAACGGATCTCGCTTCATCCTTTCAACAAATGACAAGACTATTAAACTATGGAAGGTTACGGAGCATAAGGCGAAAACCATTAAGGAGATGAACCATGATCGATATGTGAGTTCAGAAAATGCACTTTTGGCAGAGATGAGTTTCTCTAGCGAACAAGGAAAATTCTCTCTTTCCAGTGGCTGCCATCGGGATTTTTCAGAGAATACGGCGATGAACAAGGTAGCGTCTAAAGACATTAATGACATGATTCCTGATCTAGACGATACTTCTTGGAGAAGATGCCGAAAGGTGTATGGTCATGCTCATGATTTTAATATTAACTCCATTTCTAACAATAGTGATGGCGAGACGTTTATTTCTGCTGATGACTTGCGAATAAACTTATGGAACCTCGAGATTAGTAATCAATGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACGGAGATCATAACGTCGGCCGAATTCCATCCTCTGCACTGTAATCTTCTTGCGTACAGTAGCTCAAGGGGCTTTATTCGTTTAGTGGATATGCGCCAGTCTGCATTATGTGATCATAGTGCAATTCTATTACGAGCCGAAGAATTGAGTCGACCAAAATCATTTTTTACGGAGATCATTTCTTCCATTTCGGATATAAAATTTTCAAGTGATGGGCGGTTCATCATTAGTCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGGGTTCTTCTCCAGTCGCAGTTTTCAAGGTTCATGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGTCTAAGTGCAGACGGACTTCACTTTGCAACTGGATCTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTGCGGAAGGGATCACTACTGAAGCGGGAAAAACTCCCGATCGGTAA 2373 44.25 MADLYGLHPLADYSYESSSAAPLDNLLVPVNFQAYSTASADYSHWLQVFGSGHVPSVSSGDYDAALAVVSEEESAGAIREKIASHPLYPRLVDAFVDCQKIGAPPEVANILGRSVRGRDIGERTSGVSTCLGADPELDEFMETYCGILAKYKLDLSLPFVEASSFLNNMETQLSSLCNGTTRGYVSDETAAGSSEEDASAGEVELQDSLWANEDRELKDRLLRKYGGYLSSLKQEFSKTKKKVKLPKESRQILLDWWNVHCKWPYPTEMDKFELAESTGLDPKQINNWFINQRKRHWKASENMQFGDVHGSLEPSTHLYLFSSVVKFHNPFSSFLLVTSLFCSACETEAVAMTVDNILSHASLEWKFSQVFGERGAGEDIQDVDIISAIGFDKSGDNLAIGDRGGRVIIFERNERKDTSKNILTRNKLEQLNLTPASHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVKWCVSPNGSRFILSTNDKTIKLWKVTEHKAKTIKEMNHDRYVSSENALLAEMSFSSEQGKFSLSSGCHRDFSENTAMNKVASKDINDMIPDLDDTSWRRCRKVYGHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILLRAEELSRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKGSSPVAVFKVHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNQLRMFSYGSGSAEGITTEAGKTPDR 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 437936 447202 - CmaCh11G000900.1 Cma11g00090 302599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00090 790 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 359 790 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 453 467 IPR018067 -
Cma11g00090 790 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Cma11g00090 790 SMART HOX_1 238 303 IPR001356 GO:0003677
Cma11g00090 790 SUPERFAMILY WD40 repeat-like 384 776 IPR036322 GO:0005515
Cma11g00090 790 SMART ELK_2 216 237 IPR005539 GO:0003677
Cma11g00090 790 CDD homeodomain 248 298 IPR001356 GO:0003677
Cma11g00090 790 Pfam KNOX1 domain 77 111 IPR005540 GO:0003677|GO:0005634
Cma11g00090 790 Pfam WD domain, G-beta repeat 568 605 IPR001680 GO:0005515
Cma11g00090 790 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Cma11g00090 790 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Cma11g00090 790 Pfam ELK domain 216 237 IPR005539 GO:0003677
Cma11g00090 790 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Cma11g00090 790 SUPERFAMILY Homeodomain-like 238 308 IPR009057 -
Cma11g00090 790 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 577 604 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 744 770 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 390 410 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 605 632 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 633 661 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 718 743 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 469 497 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 662 689 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 690 717 IPR000009 GO:0000159|GO:0019888
Cma11g00090 790 Gene3D - 233 306 - -
Cma11g00090 790 SMART WD40_4 675 713 IPR001680 GO:0005515
Cma11g00090 790 SMART WD40_4 609 656 IPR001680 GO:0005515
Cma11g00090 790 SMART WD40_4 376 411 IPR001680 GO:0005515
Cma11g00090 790 SMART WD40_4 453 493 IPR001680 GO:0005515
Cma11g00090 790 SMART WD40_4 717 771 IPR001680 GO:0005515
Cma11g00090 790 SMART WD40_4 565 605 IPR001680 GO:0005515
Cma11g00090 790 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Cma11g00090 790 Gene3D - 661 786 IPR015943 GO:0005515
Cma11g00090 790 PANTHER OS02G0617600 PROTEIN 359 790 - -
Cma11g00090 790 Gene3D - 405 660 IPR015943 GO:0005515
Cma11g00090 790 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00072 Cma-Chr1:309992 Cma11g00090 Cma-Chr11:437936 0 dispersed
Cma05g00030 Cma-Chr5:135056 Cma11g00090 Cma-Chr11:437936 7.00E-88 dispersed
Cma08g00759 Cma-Chr8:4555244 Cma11g00090 Cma-Chr11:437936 5.03E-164 dispersed
Cma09g00322 Cma-Chr9:1326533 Cma11g00090 Cma-Chr11:437936 1.15E-77 dispersed
Cma11g00090 Cma-Chr11:437936 Cma14g01273 Cma-Chr14:10069367 0 dispersed
Cma06g00913 Cma-Chr6:6003316 Cma11g00090 Cma-Chr11:437936 3.70E-13 transposed
Cma11g00090 Cma-Chr11:437936 Cma04g01746 Cma-Chr4:8772054 1.22E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35772 PF03791 KNOX2 2.80E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00090 K04354 - csv:101206601 761.14