Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00095 ATGGCGGCAACTCAATCGGCTCCTCCATCAGATGACAATAACTCCCAGAATTCAGCTCCAGCTCCTGCACGAGCTACGGTCGAGGATCGTGGAGATGAGATGGTGGAGGTTGAGAAGCAAACCTCCCCGCCATCTGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAGGTGCAAAATGCTGTGAAGTTTCTTCAACACCCAAGAGTAATAGGCTCTCCTGTTGTTTACAGACGATCGTTTTTAGAAAGAAAAGGTCTGACGAAGGAGGAGATTGATGAAGCCTTCAGGCGTGCGCCTGACCCGCCCTCTAATGCACTGACAGCTACTGTGAGTCAAGATGGAAAGGTGAGCACAATTCAGCCACAGCCCTCTATGCAATCTCTTCAACCAGTTGCCAGTGTCGCTCCGCCTGCTGCTGCTGCTTCTAGTGGGGGTATCATCACGCGGTCTAGATTCCACTGGTCTCATGCCCTTCTCGCTGTAGGAGTACTGGCTGTTTCGGGGGCTGGAACAGCTATAGTAATTAAGAAATCTATTATTCCTAGGTTGAAATCTTGGGTGTGCAAAGTTGTGAAGGAAGATGATGACGCTGAGAAGAAAATTAATTCAAAACCAAGTGCAGCTGAGGAAGCAGCTGCTGCAGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGTCAAGAGATGCTGTATGCAAAAAATGAAGAGAAAAAGAAGTTTGAGAACTGTGTCAACTTGTTGGATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAATGCCATTCAGAAATTGGAAGCAACCACGTATGGAAGAACTGCTACTGTTGATCAAGAAGACTACCGAATTGCTGCCATGAGTTCAAAGCTGCCATATTCCAATGGCAAGGTGGACTATAGCTTGCAGTCAGCTGCACCTTCCTTGTCTGCCACACCTTTTGAACCCTCAGTTGCACCGTATCCCAAGTCTTACATGGAGACCATGGCCAAGGTCCAGAGTGGAGAAAAACCATCTAATATTAGAGACATCGATGATTATTTACCTCCTAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATTCTGGCCTTTTCTCCCAGACTCAAGAAGATGAAGGTTTGAATTACATGGTGCGAAACAATGGCGTTACCTATCAGAATGGTAATGCTTCAGTGCCTTGGTGGGAGAAGAGAAATGTTAATATTACAGAGAGCGATAATAATGAGTTGAAGACAGGCTCTTCCAGTGTATTCACTGCTGAGAAACCAGTTCAACGTACATGGGTTCCTCCTCAGCCTCCACCTGTTGCACTGCCAGAAGCAGCTGAAGCCATCAGACGTCCAAAACCAACTATCCAGAAAGAGCAGTTGACCGACGAACAGTTAGCAACCCAACCAAATGTAACTGATGAGTTGCAAAAAGCCACCAAAGTTTCTGAAACTGGAGGAGCGATCGATTCTGAGAACTTGGGAGGGAGCTCAAGTGAGATACAAGTGGAAGAATACGATTCTGGGGGACAATGA 1572 47.2 MAATQSAPPSDDNNSQNSAPAPARATVEDRGDEMVEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVIGSPVVYRRSFLERKGLTKEEIDEAFRRAPDPPSNALTATVSQDGKVSTIQPQPSMQSLQPVASVAPPAAAASSGGIITRSRFHWSHALLAVGVLAVSGAGTAIVIKKSIIPRLKSWVCKVVKEDDDAEKKINSKPSAAEEAAAAAKAAAAAASDVAKASQEMLYAKNEEKKKFENCVNLLDAQLGQMKLMLNAIQKLEATTYGRTATVDQEDYRIAAMSSKLPYSNGKVDYSLQSAAPSLSATPFEPSVAPYPKSYMETMAKVQSGEKPSNIRDIDDYLPPNPNQQPSNPRLAPRAKPWEVGTQNNSGLFSQTQEDEGLNYMVRNNGVTYQNGNASVPWWEKRNVNITESDNNELKTGSSSVFTAEKPVQRTWVPPQPPPVALPEAAEAIRRPKPTIQKEQLTDEQLATQPNVTDELQKATKVSETGGAIDSENLGGSSSEIQVEEYDSGGQ 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 517114 521651 - CmaCh11G000950.1 Cma11g00095 302604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00095 523 MobiDBLite consensus disorder prediction 471 517 - -
Cma11g00095 523 Gene3D - 46 112 IPR036388 -
Cma11g00095 523 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 2 517 - -
Cma11g00095 523 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 2 517 IPR025655 GO:0005515|GO:0005778|GO:0016560
Cma11g00095 523 MobiDBLite consensus disorder prediction 1 22 - -
Cma11g00095 523 MobiDBLite consensus disorder prediction 333 368 - -
Cma11g00095 523 Pfam Family of unknown function (DUF5572) 322 372 - -
Cma11g00095 523 MobiDBLite consensus disorder prediction 463 523 - -
Cma11g00095 523 MobiDBLite consensus disorder prediction 1 49 - -
Cma11g00095 523 Pfam Pex14 N-terminal domain 54 98 IPR006785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00095 K13343 PEX14; peroxin-14 - csv:101207964 741.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00126 Cma-Chr10:559786 Cma11g00095 Cma-Chr11:517114 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g746 . . . . . . . Bma12g01035 . . . Cma11g00095 Car10g00115 Car11g00095 . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00057 Blo15g00268 . . . . . . . . Cmo11g00095 . . . . . . . . . . . . . . . . . . . . . . . Cme02g01981
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005495 1 2 2 2 1 0 2 0 1 1 1 0 1 1 1 1 0 3 1 0 1 2 1 2 2 0 2 5 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00095 Cma_Chr11 FPKM 23.181318 25.366867 51.471935 50.579662 39.39032 38.910736 36.139153 58.938591 56.262371 51.72234