Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00098 ATGATTGAGACGAAATTGAAAGCTGAAAGATCGTACGACTCTTCGTCCAGAAATTCCGAGTCGTCAATTCTCAGTCATATGGAGTCTCCTCACTCGCCGCTGCGTTTCCACTCGCCGCTCCGATCCGACGTCGGCGACCCTCCCGAAACGTCTCCTTATGCTTCTCCGTATGCATCTCCTGAGAAGCTGCCTGATAACTCCAAGTCGATTGTTGTTGTTGATGTTGATAATAAGAGTACTCAGTTCTCGCCGCATCGGTCTCCCAATGCTGGTTCTCGGAAGCTGCCGGAGTACGCAAACTTTCCTGGAGATAGGTCGGCTTCGTCTAAGGTTATGTTTAATCGGGCGATGAAGGAGGAGGTGCCGCAGTCTGTGACCAAGGTAGGGCCGGCTGCGAGTGGAGTCGAGGAGGATGGTGGTGGTGGAAGATCGCCGAAGCAAATACCGCCGCCGCCGAGGAGGTCGAAGGATGATGCGTTGATGAAGGCGGCTTTAGGTTTTAGAGTGTGTGAAGTGGCGGTTTGCTTGATTTCGTTTTCGGTTATGGCGTCTGATAAGACTAAGGGATGGAGCGGCGACTCCTTTGATCGTTACAAGGAATACAGGTACTGCCTCACTGTTAATATAATTGCATTCGTGTATGCGGCATTTCAAGCGTTTGATCTTGTCTATACTCTAATCAAGAAGCACCATATGATACGTCATCGCGTCCGTTCTTACTTTGACTTCTTCATGGATCAGGTATTGGCATATCTTCTCATATCGTCGTCTTCCTCTGCTGCGACACGTGTTGACGACTGGCAATCGAATTGGGGAAAAGATGAGTTCACACAGATGGCCAGTGCATCAGTCAGCATGTCCTTCCTTGCCTTCGTTGCTTTTGCTCCGGTGGGGGAGAGGTCGCGCTCTTTCTCTGCACGCCGCCCCCGGTGGGCGCCAAGTCCCGCTCATATTATCACTTTCACGCTCTTATCCTTTCTTCTCAATCCTATTACCCAATCCTTTTCATATCCCCCGATTTTCTCTTCTTCTCCATCTTACTCTCTTAGTCTCCCACCTATAAAACACCCCATTTCTCTCTCTCTCTCTTTCTCTATAGATATATATATATATATATCTGTATCTATCTATCTATCTATATTGCTCTCTCGCTGTTATTTCTTCCGAAGAGCGCAATCACTTGGTGTTTCTTCTTCATGGGGTTCTTTTGAGATATATTTCTATTTTTTCTGTGTTCTTTGCTGA 1245 47.63 MIETKLKAERSYDSSSRNSESSILSHMESPHSPLRFHSPLRSDVGDPPETSPYASPYASPEKLPDNSKSIVVVDVDNKSTQFSPHRSPNAGSRKLPEYANFPGDRSASSKVMFNRAMKEEVPQSVTKVGPAASGVEEDGGGGRSPKQIPPPPRRSKDDALMKAALGFRVCEVAVCLISFSVMASDKTKGWSGDSFDRYKEYRYCLTVNIIAFVYAAFQAFDLVYTLIKKHHMIRHRVRSYFDFFMDQVLAYLLISSSSSAATRVDDWQSNWGKDEFTQMASASVSMSFLAFVAFAPVGERSRSFSARRPRWAPSPAHIITFTLLSFLLNPITQSFSYPPIFSSSPSYSLSLPPIKHPISLSLSFSIDIYIYISVSIYLSILLSRCYFFRRAQSLGVSSSWGSFEIYFYFFCVLC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 529010 534118 - CmaCh11G000980.1 Cma11g00098 302607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00098 414 MobiDBLite consensus disorder prediction 72 88 - -
Cma11g00098 414 Pfam Casparian strip membrane protein domain 159 293 IPR006702 -
Cma11g00098 414 MobiDBLite consensus disorder prediction 122 155 - -
Cma11g00098 414 MobiDBLite consensus disorder prediction 1 103 - -
Cma11g00098 414 PANTHER CASP-LIKE PROTEIN 4A3 91 295 - -
Cma11g00098 414 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 91 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00098 - - - csv:101208694 461.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00127 Cma11g00098 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01238 Cma-Chr7:6867857 Cma11g00098 Cma-Chr11:529010 2.04E-17 dispersed
Cma11g00098 Cma-Chr11:529010 Cma15g00331 Cma-Chr15:1528167 2.05E-51 dispersed
Cma10g00127 Cma-Chr10:574310 Cma11g00098 Cma-Chr11:529010 1.38E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g737 . . Bda06g00592 Bda15g00571 Bpe12g00594 . . Bma12g01034 . . Cma10g00127 Cma11g00098 Car10g00118 Car11g00098 Sed08g0128 . Cpe04g01551 Bhi02g00437 Tan09g2240 Cmetu09g0010 . Hepe09g0197 . . Cla06g01659 Cam06g1844 Cec06g1895 Cco06g1900 Clacu06g1803 . Cre06g2563 . . Cone13ag0136 . . . . . Blo13g00056 Blo15g00270 . . Bpe07g00834 . . Bma08g00168 . Cmo10g00133 Cmo11g00098 . . . . . . . . . . . . . . . . . . . . Lsi06g01549 Csa01g00155 Chy02g02575 Cme02g01965
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006246 2 1 1 2 2 1 2 1 1 1 1 0 2 1 1 2 0 1 1 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00098 Cma_Chr11 FPKM 9.430851 10.210213 9.000914 8.839958 6.276927 5.197742 6.70686 6.865981 8.325987 7.343975