Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00101 ATGGCTACTCGAGGCGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCGATCAGTTGGAAGAGGTATCATACTTGTGTACATCCCCTGCATATATGGATTGTGGTTGATTACACTGCCGTCTTTCTTTTTCGCCTGCTGATGTTTGTAGACAATGGACTTGCCGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGATATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTAGCGCTTCTGCTATTTCCATTTCTTTGGGTTTGGACTGCCATTGGTACTTTATGGTTTAAGCGGGCCCATAATTGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGGGTAATGGGTCAAGATGCTGCTACCTACCATCCTCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGATGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCAAACCTTGACCTCAGTGCTCTTTCCAATCTTCGTTCTGATACCGATAGGCCTTCTGCAAGTGTTGTTACAGCCAATAGTTATATGATATCTCATCCTTTGAGCCAAAGTTATCTAGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACGGGTACACATGGTGATTTAGAATCTGCTAGTGCTGTGGAAGTTACTGAGAATGGGTCCGCCCATGACCAAACTATACCAGAACGGTCTCCCGTAAGACAAATGCCTTTAAGTCAGTCTACACCACAACTCTAG 1140 45.88 MATRGVDFKWYDGFFLSMLATSVVIVSISWKRYHTCVHPLHIWIVVDYTAVFLFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLFPFLWVWTAIGTLWFKRAHNCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAATYHPHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANSYMISHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAVEVTENGSAHDQTIPERSPVRQMPLSQSTPQL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 543807 547607 - CmaCh11G001010.1 Cma11g00101 302610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00101 379 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Cma11g00101 379 MobiDBLite consensus disorder prediction 334 379 - -
Cma11g00101 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 - -
Cma11g00101 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Cma11g00101 379 MobiDBLite consensus disorder prediction 337 379 - -
Cma11g00101 379 Pfam Ring finger domain 236 278 IPR001841 -
Cma11g00101 379 SUPERFAMILY RING/U-box 219 286 - -
Cma11g00101 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 283 IPR013083 -
Cma11g00101 379 CDD RING-H2_RNF111_like 236 280 - -
Cma11g00101 379 SMART ring_2 237 277 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00129 Cma11g00101 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00101 Cma-Chr11:543807 Cma14g00485 Cma-Chr14:2377439 3.52E-13 dispersed
Cma10g00129 Cma-Chr10:583554 Cma11g00101 Cma-Chr11:543807 0 wgd
Cma11g00101 Cma-Chr11:543807 Cma18g00162 Cma-Chr18:818557 3.03E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00101 K16284 - csv:101208939 701.434