Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00103 | ATGAAGGACAACAATGATGGGTTTGTGCGAGCGGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTCAACAGAGCCTTGACGATGGAGAAGAACAAAAAGAAAGATGAAGATGGTAACAGCTTTCTCACTTCCGCTGCCATGTCTCGCAGTAGGTCTACTAAAGTCGCTGCTAAGGAGCGGCTGGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGGGGCGTTTACGACGGACTAGATGTCGCCGTCAAGATGCTGGATTGGGGAGAAGAGGGTCACAGGACAGAAGCTGAAATTTCTTCACTAAGGGCAGCTTTCAAACAGGAAGTTGCTGTTTGGCATAAACTCGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCGGAGTTGCAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGTTGTGTTGTGGTGGAATATCTCGCTGGAGGTGCCTTAAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATCGTTCACAGAGATGTAAAGACAGAAAACATGCTGCTGGACAAAACACGTACGGTTAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACCGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGACGTGTACAGTTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCAAGCTCTCTAGCAAATGTGATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCAGAGATGGACGAAGTAGTTTCCATGTTGGAGGTCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAACTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCTTAA | 1137 | 47.23 | MKDNNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGNSFLTSAAMSRSRSTKVAAKERLEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKMLDWGEEGHRTEAEISSLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEVIDTSKGGGMIPVDQTQGCLCFRKYRGP | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 548654 | 552496 | + | CmaCh11G001030.1 | Cma11g00103 | 302612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00103 | 378 | Pfam | Protein tyrosine and serine/threonine kinase | 77 | 349 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g00103 | 378 | ProSiteProfiles | Protein kinase domain profile. | 75 | 352 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00103 | 378 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 216 | 228 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g00103 | 378 | CDD | STKc_MAP3K-like | 81 | 349 | - | - | |
Cma11g00103 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 172 | 185 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g00103 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 210 | 228 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g00103 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 276 | 298 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g00103 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 320 | 342 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g00103 | 378 | Gene3D | Phosphorylase Kinase; domain 1 | 64 | 158 | - | - | |
Cma11g00103 | 378 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 350 | IPR011009 | - | |
Cma11g00103 | 378 | Coils | Coil | 16 | 36 | - | - | |
Cma11g00103 | 378 | Gene3D | Transferase(Phosphotransferase) domain 1 | 176 | 365 | - | - | |
Cma11g00103 | 378 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 372 | - | - | |
Cma11g00103 | 378 | PANTHER | - | 1 | 372 | - | - | |
Cma11g00103 | 378 | SMART | serkin_6 | 75 | 352 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00131 | Cma11g00103 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00103 | Cma-Chr11:548654 | Cma14g01731 | Cma-Chr14:12710656 | 0 | dispersed | |
Cma10g00131 | Cma-Chr10:595793 | Cma11g00103 | Cma-Chr11:548654 | 0 | wgd | |
Cma11g00103 | Cma-Chr11:548654 | Cma11g01426 | Cma-Chr11:9401145 | 0 | wgd | |
Cma11g00103 | Cma-Chr11:548654 | Cma13g00893 | Cma-Chr13:7203622 | 7.77E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68869 | PF07714 | PK_Tyr_Ser-Thr | 7.50E-64 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00103 | - | - | csv:101209182 | 745.347 |