Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00103 ATGAAGGACAACAATGATGGGTTTGTGCGAGCGGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTCAACAGAGCCTTGACGATGGAGAAGAACAAAAAGAAAGATGAAGATGGTAACAGCTTTCTCACTTCCGCTGCCATGTCTCGCAGTAGGTCTACTAAAGTCGCTGCTAAGGAGCGGCTGGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGGGGCGTTTACGACGGACTAGATGTCGCCGTCAAGATGCTGGATTGGGGAGAAGAGGGTCACAGGACAGAAGCTGAAATTTCTTCACTAAGGGCAGCTTTCAAACAGGAAGTTGCTGTTTGGCATAAACTCGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCGGAGTTGCAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGTTGTGTTGTGGTGGAATATCTCGCTGGAGGTGCCTTAAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATCGTTCACAGAGATGTAAAGACAGAAAACATGCTGCTGGACAAAACACGTACGGTTAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACCGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGACGTGTACAGTTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCAAGCTCTCTAGCAAATGTGATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCAGAGATGGACGAAGTAGTTTCCATGTTGGAGGTCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAACTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCTTAA 1137 47.23 MKDNNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGNSFLTSAAMSRSRSTKVAAKERLEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKMLDWGEEGHRTEAEISSLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEVIDTSKGGGMIPVDQTQGCLCFRKYRGP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 548654 552496 + CmaCh11G001030.1 Cma11g00103 302612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00103 378 Pfam Protein tyrosine and serine/threonine kinase 77 349 IPR001245 GO:0004672|GO:0006468
Cma11g00103 378 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00103 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cma11g00103 378 CDD STKc_MAP3K-like 81 349 - -
Cma11g00103 378 PRINTS Tyrosine kinase catalytic domain signature 172 185 IPR001245 GO:0004672|GO:0006468
Cma11g00103 378 PRINTS Tyrosine kinase catalytic domain signature 210 228 IPR001245 GO:0004672|GO:0006468
Cma11g00103 378 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672|GO:0006468
Cma11g00103 378 PRINTS Tyrosine kinase catalytic domain signature 320 342 IPR001245 GO:0004672|GO:0006468
Cma11g00103 378 Gene3D Phosphorylase Kinase; domain 1 64 158 - -
Cma11g00103 378 SUPERFAMILY Protein kinase-like (PK-like) 56 350 IPR011009 -
Cma11g00103 378 Coils Coil 16 36 - -
Cma11g00103 378 Gene3D Transferase(Phosphotransferase) domain 1 176 365 - -
Cma11g00103 378 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 372 - -
Cma11g00103 378 PANTHER - 1 372 - -
Cma11g00103 378 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00131 Cma11g00103 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00103 Cma-Chr11:548654 Cma14g01731 Cma-Chr14:12710656 0 dispersed
Cma10g00131 Cma-Chr10:595793 Cma11g00103 Cma-Chr11:548654 0 wgd
Cma11g00103 Cma-Chr11:548654 Cma11g01426 Cma-Chr11:9401145 0 wgd
Cma11g00103 Cma-Chr11:548654 Cma13g00893 Cma-Chr13:7203622 7.77E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68869 PF07714 PK_Tyr_Ser-Thr 7.50E-64 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00103 - - csv:101209182 745.347