Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00104 ATGGCTGCTCGGAGAGGAATCTGTTCTTTACTATCTCGTTCTCTGTTATCATCTTCTTGTTCTTCTGGTTATGGGTTTGGTTCTTTTCTTCAATCTCGTGGGAGAGTTTCAAGGTTGCATGGAAGAGGGAGAAGATTCAGCTCATCTGCTGTGGCGGAGGAGGAACTTGTTACTCCTCCTGTTCAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTGGATGCTGCATCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCGGAAGATATCAACCGGGCGGTATCGGCAGCTCGCAAGGCTTTCGATGAGGGCAAATGGCCGAAGATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTTGCTGATTTGGTTGAGAAACATAGCACGGAGCTTGCAGCATTGGAGACATGGAACAATGGCAAACCTTATGAACAATCGGCTCGGACCGAAATACCTATATTCGTGCGCTTATTTCACTATTACGCCGGGTGGGCGGACAAAATCCATGGCTTGACCGTTCCAGCTGATGGGAAATATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCCTTGTCCTAAAAACTGCAGAGCAAACGCCTCTGACCGCTCTTTATGTCGCAAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGAGTTCTGAATGTCGTTTCGGGCTATGGTCCAACAGCGGGTGCTGCCCTTGCTAGCCACATGGATGTGGACAAGGTAGCCTTTACAGGATCGACGAACACGGGAAAAGTTGTGCTCGAATTGGCAGCTAAAAGCAATTTGAAACCGATAACGCTCGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTCGATAAGGCCGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTTGTGCATGAACGTATATACGATGAGTTTGTCGAGAAGTCGAGGGCACGTGCCCAAAGACGTGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATCGACTCGGAGCAGTTTGCAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGACAGACTTGGGTCCAAGGGATACTTCGTCCAGCCGACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCAAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTTATTCAAAGGGCAAATGCAACTCGTTACGGTCTAGCTGCTGGAGTTTTCACTACAAACCTCGACACAGCCAACACCATAACACGAGGATTGAGAACAGGGACGGTGTGGGTCAATTGCTTCGATGTATTTGACGCTGCAATACCGTTTGGTGGGTATAAGATGAGCGGAATGGGGAGGGAGAAAGGAATTTACAGCCTCCAAAACTATTTGCAGGTAAAGGCTGTAGTTACTCCTCTGAAGAATCCAGCATGGTTATGA 1641 47.11 MAARRGICSLLSRSLLSSSCSSGYGFGSFLQSRGRVSRLHGRGRRFSSSAVAEEELVTPPVQISYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEGEAEDINRAVSAARKAFDEGKWPKMTAYERSRILLRFADLVEKHSTELAALETWNNGKPYEQSARTEIPIFVRLFHYYAGWADKIHGLTVPADGKYHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTLVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKVAFTGSTNTGKVVLELAAKSNLKPITLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFAKVLRYIKSGIESDATLECGGDRLGSKGYFVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANATRYGLAAGVFTTNLDTANTITRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 552767 555871 - CmaCh11G001040.1 Cma11g00104 302613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00104 546 CDD ALDH_F2BC 63 538 - -
Cma11g00104 546 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 312 319 IPR029510 GO:0016491
Cma11g00104 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 70 534 IPR016162 GO:0016491
Cma11g00104 546 Pfam Aldehyde dehydrogenase family 74 536 IPR015590 GO:0016491
Cma11g00104 546 SUPERFAMILY ALDH-like 62 540 IPR016161 GO:0016491
Cma11g00104 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 316 505 IPR016163 GO:0016620
Cma11g00104 546 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 39 546 - -
Cma11g00104 546 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 39 546 - -
Cma11g00104 546 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 340 351 IPR016160 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00003 Cma-Chr5:17096 Cma11g00104 Cma-Chr11:552767 0 dispersed
Cma11g00104 Cma-Chr11:552767 Cma11g00601 Cma-Chr11:2875310 0 dispersed
Cma13g00931 Cma-Chr13:7373612 Cma11g00104 Cma-Chr11:552767 3.07E-13 dispersed
Cma11g00104 Cma-Chr11:552767 Cma12g00001 Cma-Chr12:1241 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00104 K00128 - csv:101209430 979.933