Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00104 ATGGCTGCTCGGAGAGGAATCTGTTCTTTACTATCTCGTTCTCTGTTATCATCTTCTTGTTCTTCTGGTTATGGGTTTGGTTCTTTTCTTCAATCTCGTGGGAGAGTTTCAAGGTTGCATGGAAGAGGGAGAAGATTCAGCTCATCTGCTGTGGCGGAGGAGGAACTTGTTACTCCTCCTGTTCAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTGGATGCTGCATCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCGGAAGATATCAACCGGGCGGTATCGGCAGCTCGCAAGGCTTTCGATGAGGGCAAATGGCCGAAGATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTTGCTGATTTGGTTGAGAAACATAGCACGGAGCTTGCAGCATTGGAGACATGGAACAATGGCAAACCTTATGAACAATCGGCTCGGACCGAAATACCTATATTCGTGCGCTTATTTCACTATTACGCCGGGTGGGCGGACAAAATCCATGGCTTGACCGTTCCAGCTGATGGGAAATATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCCTTGTCCTAAAAACTGCAGAGCAAACGCCTCTGACCGCTCTTTATGTCGCAAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGAGTTCTGAATGTCGTTTCGGGCTATGGTCCAACAGCGGGTGCTGCCCTTGCTAGCCACATGGATGTGGACAAGGTAGCCTTTACAGGATCGACGAACACGGGAAAAGTTGTGCTCGAATTGGCAGCTAAAAGCAATTTGAAACCGATAACGCTCGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTCGATAAGGCCGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTTGTGCATGAACGTATATACGATGAGTTTGTCGAGAAGTCGAGGGCACGTGCCCAAAGACGTGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATCGACTCGGAGCAGTTTGCAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGACAGACTTGGGTCCAAGGGATACTTCGTCCAGCCGACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCAAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTTATTCAAAGGGCAAATGCAACTCGTTACGGTCTAGCTGCTGGAGTTTTCACTACAAACCTCGACACAGCCAACACCATAACACGAGGATTGAGAACAGGGACGGTGTGGGTCAATTGCTTCGATGTATTTGACGCTGCAATACCGTTTGGTGGGTATAAGATGAGCGGAATGGGGAGGGAGAAAGGAATTTACAGCCTCCAAAACTATTTGCAGGTAAAGGCTGTAGTTACTCCTCTGAAGAATCCAGCATGGTTATGA 1641 47.11 MAARRGICSLLSRSLLSSSCSSGYGFGSFLQSRGRVSRLHGRGRRFSSSAVAEEELVTPPVQISYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEGEAEDINRAVSAARKAFDEGKWPKMTAYERSRILLRFADLVEKHSTELAALETWNNGKPYEQSARTEIPIFVRLFHYYAGWADKIHGLTVPADGKYHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTLVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKVAFTGSTNTGKVVLELAAKSNLKPITLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFAKVLRYIKSGIESDATLECGGDRLGSKGYFVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANATRYGLAAGVFTTNLDTANTITRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 552767 555871 - CmaCh11G001040.1 Cma11g00104 302613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00104 546 CDD ALDH_F2BC 63 538 - -
Cma11g00104 546 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 312 319 IPR029510 GO:0016491
Cma11g00104 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 70 534 IPR016162 GO:0016491
Cma11g00104 546 Pfam Aldehyde dehydrogenase family 74 536 IPR015590 GO:0016491
Cma11g00104 546 SUPERFAMILY ALDH-like 62 540 IPR016161 GO:0016491
Cma11g00104 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 316 505 IPR016163 GO:0016620
Cma11g00104 546 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 39 546 - -
Cma11g00104 546 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 39 546 - -
Cma11g00104 546 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 340 351 IPR016160 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00104 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101209430 979.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00003 Cma-Chr5:17096 Cma11g00104 Cma-Chr11:552767 0 dispersed
Cma11g00104 Cma-Chr11:552767 Cma11g00601 Cma-Chr11:2875310 0 dispersed
Cma13g00931 Cma-Chr13:7373612 Cma11g00104 Cma-Chr11:552767 3.07E-13 dispersed
Cma11g00104 Cma-Chr11:552767 Cma12g00001 Cma-Chr12:1241 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g722 . . . . Bpe12g00589 . . . . . . Cma11g00104 . Car11g00103 Sed12g1882 . Cpe04g01548 Bhi02g00432 Tan09g2233 Cmetu05g1877 . Hepe09g0192 . . Cla06g01654 Cam06g1838 Cec06g1889 Cco06g1894 Clacu06g1798 Cmu06g1740 Cre06g2558 . . Cone13ag0133 . . . . . . . . . . . . . . . Cmo11g00105 . . . . . . . . . . . . . . . . . . . . Lsi06g01544 Csa01g00160 Chy02g02570 Cme02g01959
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00604 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 2.9e-212 735.3
Cma11g00601 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.5 2.3e-209 725.7
Cma12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.8e-159 558.5
Cma05g00003 . 34 562 Aldehyde Dehydrogenase Gene Family AT3G24503 51.9 4.5e-157 552.0
Cma11g00104 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 9.4e-155 544.3
Cma11g00104 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 9.1e-257 883.2
Cma12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.8e-250 860.9
Cma05g00003 . 1 562 Aldehyde Dehydrogenase Gene Family AT3G48000 72.0 1.3e-242 836.3
Cma10g00604 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.0e-162 570.9
Cma11g00601 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 53.6 2.0e-158 556.6
Cma12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.2e-169 592.0
Cma11g00104 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.7e-167 586.3
Cma05g00003 . 1 406 Aldehyde Dehydrogenase Gene Family AT1G23800 71.4 2.4e-164 575.9
Cma10g00604 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.0e-104 374.8
Cma11g00601 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 4.4e-102 369.0
Cma09g00785 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 3.4e-179 625.5
Cma01g01383 CST 16 489 Aldehyde Dehydrogenase Gene Family AT4G34240 64.6 4.5e-179 625.2
Cma09g00784 . 3 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.3 3.2e-177 619.0
Cma01g01383 CST 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.1e-178 621.3
Cma09g00784 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 3.1e-175 612.1
Cma09g00785 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 4.9e-173 604.7
Cma02g01246 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 7.0e-119 424.9
Cma02g01246 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 55.4 8.2e-156 547.7
Cma16g00646 . 5 401 Aldehyde Dehydrogenase Gene Family AT4G36250 60.2 1.8e-147 520.0
Cma20g00289 . 39 571 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 5.3e-225 777.7
Cma02g00667 . 33 540 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 7.2e-222 767.3
Cma11g01675 . 12 506 Aldehyde Dehydrogenase Gene Family AT2G14170 83.5 7.0e-242 833.9
Cma03g00850 . 212 612 Aldehyde Dehydrogenase Gene Family AT2G14170 66.1 2.8e-158 556.2
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.6e-247 852.4
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 2.0e-250 862.1
Cma12g01154 . 1 501 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 5.3e-267 917.1
Cma05g01236 CCT,CST 1 119 Aldehyde Dehydrogenase Gene Family AT2G24270 73.9 6.7e-44 176.0
Cma13g00931 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.2 6.3e-261 897.1
Cma17g00366 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 3.9e-277 951.0
Cma08g01274 CST 1 560 Aldehyde Dehydrogenase Gene Family AT3G66658 69.4 1.0e-248 856.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00104 Cma_Chr11 FPKM 4.559182 4.855111 1.473627 1.538185 6.148711 8.002777 7.807132 0.552474 0.235474 0.432624