Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00105 ATGCTATCAAGTTCTTGCTTGAGTTTGTTAGAGTTATCATCTGTGGATATGTTGGATTTTCCTCCTACACCGAGAAATGTTCCACAGGCGATGACTGCGTCGGGGATACTATCCAATAAATGTCGAGGGAGGACGATAATAGTGGCGAACTTCCTTCCTGTTCATGCTAAAAAGGATCCAGATTCTGGGAGATGGAACTTTAGCTTCGACGAAGATTCGCTTTTGCTTCAGATGAAAGATGGATTCTCATCAGATGTTGATGTTGTTTATGTTGGATCATTGAAGGTTGATGTCAATGTCCAAGAACAAGAAGAGATTTCACAGAAACTACTGGAGGAATTCAACTGTGTACCGACTTTCGTCCCGACGTCCCTTCAGAAACAGTTCTATCATGGATTCTGTAAACAAAATCTATGGCCACTTTTCCATTACATGATGCCGATTTCACCTTATCACGGATCTCGCTTTGATCGACCTCTTTGGTTAGCATATCTTTCAGCGAACAAAAGGTTTGCTGATAAAGTTATGGAGGTGATCAATTTGGAAGAAGATATGGTTTGGATTCATGACTATCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGTTACAGTCGAATTAAGCTTGGATTCTTCCTTCATAGTCCGTTTCCCTCATCAGAGATCTTCCGAACTCTGCCTGTTAGAGACGAGATTCTGAAAGCGTTACTTAACACGGACCTAATCGGCTTCCATACGTTCAGCTATGCTCATCACTTTCTATCATGTTGTAGTAGACTGCTCGGTTTGGAGTATGAACCGAAACGTGGTTATCTCACGCTTGACTATTTCGGACGTACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATGGGTCGACTCGAATTCGCATTAAATCATTCCCACACTTCAATAAAAGCCAAGGAGATCAAAGAAAACTTCAAAGGAAAGAAGGTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTATGGAAAAGCTGTTGAACCAGCATCCAGAGTTACGGGGCAGTGTCGTTCTGGTGCAAATTCTAAATCCTGCACGGAGCAATGGGAACGACGTCCTCGAAGCGAAAATGGAAACTTACGAGATAACCAAAAGGATTAACAAGGTTTTCGGTTTTCGGGGATATGAACCTGTGATCTTGATTGATCATCCTATTCCTTTTCATGAGAAGATTGCATATTATGTATTAGCTGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATACGAGTACATTGTTTGTCGACAGGGAACTTCTCAAATCGACGAAGTTTTGGATGTCTCCCCGGATTCACCTCATACCAGCACGATTGTCGTGTCAGAATTCATAGGTTGTTCGCCATCTCTAAGTGGTGCGGTTAGAGTAAACCCTTGGGATTTTGATGCTGTAGCTGAGGCACTTTACGAGGCTGTCGCAATGCCTTCTTTAGAGAAGCAACTAAGGCACGAAAAACATTACCGATACATTAGCTCTCATGACGTTGCTTACTGGGCTCGCAGTTTCTCGCAAGATTTAGAGCGAGCATGTCAAGATCACTACAGTAAACGATGCTGGGGAATTGGACTCGGTTTAGGATTCAGAATTCTGTCACTTTCACCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATCGGAGCGCTTCTAGGAGGGCAATATTTTTGGACTACGACGGGACTGTCGTTTCCCAAGCTTCGTTGGTCAAATCCCCGACGCCCGAAGTCATTTCTATACTCAACGACCTTTGCAAGGATTCAAAGAACATTGTGTTCATAGTTAGTGGGAGGGGGAAAGATACTCTTAGTTCGTGGTTCGATTCGTGTAAGAATCTCGGTATTGCCGCTGAACATGGATACTATTTGAGGTGGAAGAGGGACTCTGAATGGGAAGTTAGTACATTAGCTGAAAACTTTGGCTGGAAAAGGATTGCAGAACCTGTGATGAAACTATACACCGAGGCGACCGATGGATCGTCCATAGAGCCCAAGGACAGTGCCTTAGTATGGCATCATCGAGACGCCGATCCATGTTTTGGTTCATGCCAGGCCATGGAGCTCTTAGATCACCTTGAAAATGTTCTTGCTAACGAACCTGTAGTCGTCAAAAGAGGCCACCAGATAGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACTATGATCACCTCTGATAAGGCGCCCGACTTTGTGATGTGCATCGGAGACGATCGATCTGATGAAGACATGTTCGAAAGCATATCATGTACAAGCTATAGCTCATCCCTTGCTGTTCCTCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCACCGACGTCTTGACCGTACTTCATAGCCTGGCCACCTCTACTAGCGGTAAACTGAGATCAGATCCTCTAAGGAGTCGGGTTCGTGTCTTCCATTTGAGATTACCCGATTCTTTACCGATCACGGGTGGCAATGGATTCACATTCAGGAGATGCCTAGAGTGCTCAAAAAACGCATTGTCAAATGCGGTAATGGCGTATGCACATGCAGAAGAGCCTCCTTCTTGTGAAGCCGATAAATCCAATTCTCTGTTGCCCACCACCAGCTGCAGTTGTTCCCGGCTATCGTGCTTCGGATCTCGCCGAACGGCCGCCGGCGGGCCGTCATGGTGGGAGCGGATTAGGGCGTCGGAGGTTCACAACGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTCTTTTGAAGCTCCGAGAGTGGTCGGAGATCGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTCAATCGGAATAGAAGTGGTGCTACTGCTGCTGCTAGGCCTGGAAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTCGACGAAGGCTCGGGGCAGATAGGGGAACTGGACGACGATATCGATGATTTCAGTGGATTTCGAAACTTCTCTGCTCGCTACGCTTCAATTCCGGGGTCGTTGAAGACTGGAGGAACCACTGTTTTGGGGAAGGATGCTCCTACCGTCGAGTAA 3135 45.36 MLSSSCLSLLELSSVDMLDFPPTPRNVPQAMTASGILSNKCRGRTIIVANFLPVHAKKDPDSGRWNFSFDEDSLLLQMKDGFSSDVDVVYVGSLKVDVNVQEQEEISQKLLEEFNCVPTFVPTSLQKQFYHGFCKQNLWPLFHYMMPISPYHGSRFDRPLWLAYLSANKRFADKVMEVINLEEDMVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIFRTLPVRDEILKALLNTDLIGFHTFSYAHHFLSCCSRLLGLEYEPKRGYLTLDYFGRTIYIKILPVGVHMGRLEFALNHSHTSIKAKEIKENFKGKKVILGVDDMDIFKGIGLKLLAMEKLLNQHPELRGSVVLVQILNPARSNGNDVLEAKMETYEITKRINKVFGFRGYEPVILIDHPIPFHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQIDEVLDVSPDSPHTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVAEALYEAVAMPSLEKQLRHEKHYRYISSHDVAYWARSFSQDLERACQDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKSPTPEVISILNDLCKDSKNIVFIVSGRGKDTLSSWFDSCKNLGIAAEHGYYLRWKRDSEWEVSTLAENFGWKRIAEPVMKLYTEATDGSSIEPKDSALVWHHRDADPCFGSCQAMELLDHLENVLANEPVVVKRGHQIVEVKPQGVTKGLVAERVLSTMITSDKAPDFVMCIGDDRSDEDMFESISCTSYSSSLAVPPKIFACTVGQKPSKAKYYLDDTTDVLTVLHSLATSTSGKLRSDPLRSRVRVFHLRLPDSLPITGGNGFTFRRCLECSKNALSNAVMAYAHAEEPPSCEADKSNSLLPTTSCSCSRLSCFGSRRTAAGGPSWWERIRASEVHNEGRWWARGVRVLLKLREWSEIVAGPRWKTFIRRFNRNRSGATAAARPGKFQYDPLSYAMNFDEGSGQIGELDDDIDDFSGFRNFSARYASIPGSLKTGGTTVLGKDAPTVE 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 560642 566492 + CmaCh11G001050.1 Cma11g00105 302614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00105 1044 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 44 533 - -
Cma11g00105 1044 TIGRFAM T6PP: trehalose-phosphatase 573 824 IPR003337 GO:0003824|GO:0005992
Cma11g00105 1044 CDD GT20_TPS 44 529 IPR001830 GO:0003824|GO:0005992
Cma11g00105 1044 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 832 IPR001830 GO:0003824|GO:0005992
Cma11g00105 1044 Gene3D Glycogen Phosphorylase B; 37 297 - -
Cma11g00105 1044 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 577 779 IPR006379 -
Cma11g00105 1044 CDD HAD_TPP 577 816 - -
Cma11g00105 1044 Pfam Glycosyltransferase family 20 44 529 IPR001830 GO:0003824|GO:0005992
Cma11g00105 1044 Gene3D - 702 834 IPR023214 -
Cma11g00105 1044 Gene3D - 575 682 IPR023214 -
Cma11g00105 1044 SUPERFAMILY HAD-like 576 824 IPR036412 -
Cma11g00105 1044 Gene3D Glycogen Phosphorylase B; 298 513 - -
Cma11g00105 1044 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 832 - -
Cma11g00105 1044 Pfam Trehalose-phosphatase 579 813 IPR003337 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00135 Cma11g00105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00137 Cma-Chr10:618783 Cma11g00105 Cma-Chr11:560642 4.07E-69 dispersed
Cma11g00105 Cma-Chr11:560642 Cma03g01336 Cma-Chr3:8580070 0 dispersed
Cma09g00603 Cma-Chr9:2823459 Cma11g00105 Cma-Chr11:560642 2.40E-06 transposed
Cma10g00135 Cma-Chr10:613343 Cma11g00105 Cma-Chr11:560642 0 wgd
Cma11g00105 Cma-Chr11:560642 Cma13g00900 Cma-Chr13:7229351 4.86E-43 wgd
Cma11g00105 Cma-Chr11:560642 Cma18g00157 Cma-Chr18:796423 1.05E-37 wgd
Cma11g00105 Cma-Chr11:560642 Cma04g01714 Cma-Chr4:8627964 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00105 K16055 - csv:101209676 1497.64