Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00108 ATGGATCTAGGCAATTCAGAACAATTTGGGCTTGGATATGTGAAAAGGCCCACTATTCTCAAATTCTCTCGCACTACGCACTCCCGCGTCACCGCTGCTATCTCGTCGCCGTTTACTCGCCGGAACCCAGATCGTTGCCGCTTTCTGGGTCCAAGCCTTGTTTTTGCAGTTCATAATATATCATCCCTTCTGGGTACAGTCCGTCGAACTGTAATAAGACTACGAACTTCAGAATCGGAGGTGAGTGAATCGGAGCCTTCGCCGTCATTTTGGGACAGACGTTGTTTTCTTTTCTTCGCTATCTCCTTCTCAGTTGTTGCTGCTCCCCGGCACGGCCCCATCGGAAGTTTAATTTTCTCTGTAACCAGACGCCGCCTCACGCCAGTCTTCTTCGGCAGCCCCTCATTGTTTGGTCTCGTTGACCACCATTGGTGCAGCATGCTTCTGACACGAATATTTGGGCGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTGCTGCTACAGCTGCTGCTGGCTCTACAGCTAGGACAGGGTACAATCCGCTCGAGGAGTTTTTTGAGGCACATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTCAAGTCTTGGGACGATCTTAACAAGTTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGGCAGATGCTTAACGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAATCAATGTGTCGAATCAAACAGGTACTTACCGAGAGAGCCATCGATGAACCAGATCCTCGGAGATGCGCAGAGTTGAAGAGGATGCTAATCAATGATTCGAACCCAGCCTTGTACGTGGTGGTGTTCGCCGTCCCGAGCATTTTGGGGCACGTTGTACCAGGTCAGTTGGGGCTGTGGGGGGAGTTGCATCACCGCCATGTCTATTTATCATTTACTCACCCAAATTGCCCGATCTGCCCGGGACTGCCCGGTCTCGGCTCCCTACCAAGTACCAAGTGGGATCGAGGTTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGTGAGAACTGGAAACGGAGTCGGCACATGTGGACAGTCCCCACACGCGGTACCCAGATCGTAGAAGCAGATGGTTCTTCGTCATCGTCTTCATCTGCACCTACTTCGTTTTGCAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCAAAGACTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACTACTGGTAAGGAGAATAAATTGAAGTTGGGTGTGAATTGGCTTTATCGATCTTCTGAATTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCCAACGAAGTGTTCTATTCCTTTCACAAGGATGAAATTCCTGCTGCATCTTTACTCCACCCGTGTAAAGTTGCATTCCTTCCTAAGGACATCAAACTTCCATCAGGAATTTCGTCATTTGTGTGCCGGAGAGTGTATGACATAAGGAATAAGTGTTTACGGTGGCTAACTGATCAGGATTATATTAATGAACATCGGGAAGAAGTGGATCAATTATTAGACAAGACGAGGTTAGAAATGCATGCTTCAGTCCAACCTGGTGGCCGATCACCTAAGCGTACTAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAGCCGCCTTTCCTTCTCACACGAAAGGCAAGAAAAGAGAGAGGAGTGACCAGGGATTAGAATCTGTTAAACATGAACGCATCGTAAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATACTTTAAAGTTTGAGATCACAAAAATTGCTGAAAAAGGGAGCTTAGTTGATTCTGAAGCTGTCGAGAAATTGGTGCAGCTTATGCTGTCTGATAGTGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAATCAGTTTGTACATCTTAAGGGTTTACCTGTGCTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGCGGTAGCCCCAAGGATAGCGATAAAGCAGTTGAGGAATTTCTACTGATTTTGCTTCGAGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTGCAGATGTGCCATATTGGAAAGTCTGTGAATCATTTACGCTCACATAAGAACTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAACATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGATCATCTGAAGTTGCTCATGGTGGGAGGAACCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCAGTTTCTCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCTCAGGATGATAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCCGCATCAGCAAGTATTAACTCGAAAGATGGATCATCCAGAAATCCTGGTGTTTGTGGCACAGCTGATCTTTCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCATAATAATAGTCAATCTTGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCCAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGACAGCGCAAATCAGTCAATGGATTTCCTAGCACTGTTCTCTCTGGGGCTCAACGAGATGTAGGGTCAGGAAAAAGTTCTTTGCACCGAAACACAGTTTTAGAGAGATCATCTCAATCGGGAACAACCTTTGAAAAGGCATCTGATGGACCTATTGGTGAGGGAAACAGTCCTAAATTGATAGTAAAGATCACCAATCGAGGCCGGAGTCCTGCACACAGTGTTAGTGGTGGATCGTTTGAAGATCCTTCAATAATGAATAGCAGGGCTTCTTCTCCTCCACTTTCAGAGAAGCATGATCAATTTGATCACAGTAAGAGTGATACCTGTCAGCCTAATATTACTGGAGATGTGAATGTCGGGCCCTGGCAGAATAGTGATGTAAAGGATATGGTGACCGGCTCTGATGATGGCGATGGATCTCCTGCTGCTGTACATGGTGAGGATCGATGTCAGGCTGTCAAGGACATAAAAGTTTCAAGGGCGAATGATCATAAAAATGGGAAGTTACATGAAGCTTCTTTGAGCTCCATAAATGCTTTAATTGAGAGTTGTATTAAATGCTCCGAAGCTAATATGCCTACCTCACTCATGGATAATGTTGGAATGAATTTACTTGCTAGTGTAGCTGCCGTTGAGATGTCAAAGTCTGATTTTGTTTTGCCTTCTGATACACAAGGAAATATCTCTGCAGTTGACCGAACCTCCAGAAGCAGTGATTGTAAAGTTAAAGCATCTTATCCTGAAGAGGATGCTAGAGATAACATCCAGTCGAATGATGCTATGGATGTTTCTGAGCAGGGCGTGATCACTACTTCTTTTGGAGCTAAAATTGTGGATGGAAGGTGTGCTTCACAATCTGAAGAGAAACCTGTTGGAGATTTGAGTGGTCATTCAAAATCATCTGGTGTAAATTTGCAACCAACTGCTGTGCCATTTCCAGATGGTTGTATAAAAATGAACGAGGCTGGAGGGCCTATCTCTCCTTCTAGGATGCCAGAGAAGGGCTCTGAGATGGAGGGGGCTAAACCAGTTGAAGACAGTAAGGCAGCTGATGTAGTTGATGGAGATAGCAGTTCTAAATCTAAACCTAAGCCAAGCAGTTCTTTGCCTGATGGTAGTGTGGTTGGCGATGGTATCTCAAATCGCGAAGTTGAAGCGGATGTTGTTAATGACCCTTTGCATAGGTTGCAAGAAGTTGATGGCAATTCAAACGATAGACTGCATGGTGTTAGTACATCTGACCGAAGGCTATCTTCTAAGTTGAACTGCGATTCTGCCAAATTAAGGAATGATGAATTACTTCAGGCTTCAGGCTCTTCAAGTAATTTGATTTCTGTAAGTGCAAGTGAGATGAAGGCCGAGAAGAATGATGAAACCAACACATCAGCTGATGTGAAACTTGAAAAACCTCAAAGCGACCTGGATCCTATGGTATCTGAATCTCGAAGTGTAGGTGGCTCATGTTCAGCGACCAACCTTGAGGGCGAGCACATGGAGGAGAATTTGGAATCTAAATTTAATAAGGAGAAAAATGGAGGACAAACACATCATTGGCAATCTATTCTCACTCCTGTTCGAGAAACTGAGCAGCCTCTTCCATCCAAGAGGTCCAAATTAGCTGATGCTGAAGCAGAAGAAGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTTCAGGAGCGCCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCATTCCTGCTTCAATTACAACTGTTCAGTTAATTAGTCCGTTACCTTTTCCTGTATCTATATCTAATGTGGCAAGCAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAAGACCCTTTGTACCACCTGACGATCTATTGAGGAGTAAAGGGGAACTTGGCTGGAAAGGATCAGCCGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAATTCTAGAAATGCCACTAGGTGTTCCAACTGCTTCACTTCCTGATGCTGCAGCCAGTAAAATTTCACGACCCCCATTGGATATTGACTTGAATGTTCCTGATGAAAGGACTCTTGAGGATATGAATCCCCAGATATTTTCTGAGGAGGTGGCTTCTAAGTCTGGCCTGGTTAATAATCGTGATCTAGCACGTGATATAGGTTCCACACATGGGCGTTGTTCTGGTGGGCTAGATCTTGACTTAAACCGAGTTGATGATGCTCCTGATCCAAGCAGCTTCTCCTTGAACAACTGTCGTAGAATAGAAACTCCTCTTAGTGTTAAATCATCAACTGTTCGTCTCAATGACAAGGTGAATTTTCACAGGGACTTTGATTTGAATGGGCCTATTGCTGATGAGAGCACTACTGAACCGTCAATATTTCCTCAGCATGCTAGAAGCCATATGCCATCCCAGCCAACTGTTTCTGGCCTTTGGATGAACAATGCAGAAATAGGAAATTTTCCATCCTGGTTTCCTCCAGGAAATGCTTATTCAGCTGTTGCAATTCCATCAATTATGCCTGATAGAGCAGAACAGGCTTTTCCAGTTGCAACAAATGGACCGCCCAGGATTTTGGGACCCACAAGTGGTACCAGTCCATATAGCACCGATGTCTTTAGAGGCCAAGTATTATCATCTTCTCCTGCAGTGCCGTTTCCTTCAACTTTTCAATATCCTGTCCTTTCTTTTGGAAACAGCTTTCCTCTACCCTCGGCCACATTTTCAGGCAACGCAACAACATATGTTGATTCGTCATCTGGTGGCAGGCTTTGCTTCCCTGCAGTCGCTTCACAGTTCTTAGCTCCTCCCGGTGCAGTTTCAACGCATTATCCAAGACCTTTTGTTGTCAGTCACTTGGATGGCAGCAACAATACTAGTTCTGATAGTAGTAGAAAGTGGGGGAGACAAGGTTTAGATCTAAATGCTGGCCCTATTGTTCCAGACGTTGAAGGAAGAGAGGAATCATCGTCCTTGGTACCAAGGCAACTATCTGTTGCCAGTTCGCAAGCCACCACCGAGGAGCATATGAGGATTTACCAGCCAGCAATTGGCATGATGAAGAGAAAAGAGCCAGAGGGAGGGTGGGATGGGTACAAACAGTCATCATGGTAG 5943 45.03 MDLGNSEQFGLGYVKRPTILKFSRTTHSRVTAAISSPFTRRNPDRCRFLGPSLVFAVHNISSLLGTVRRTVIRLRTSESEVSESEPSPSFWDRRCFLFFAISFSVVAAPRHGPIGSLIFSVTRRRLTPVFFGSPSLFGLVDHHWCSMLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRCAELKRMLINDSNPALYVVVFAVPSILGHVVPGQLGLWGELHHRHVYLSFTHPNCPICPGLPGLGSLPSTKWDRGWNWGKCKAMHGRRGENWKRSRHMWTVPTRGTQIVEADGSSSSSSSAPTSFCKGGRRISVGDCALFKPPKDSPPFIGIIRWLTTGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDIKLPSGISSFVCRRVYDIRNKCLRWLTDQDYINEHREEVDQLLDKTRLEMHASVQPGGRSPKRTSGPTSTSQLKANSDSVQAAFPSHTKGKKRERSDQGLESVKHERIVKADEGDSANCRLENTLKFEITKIAEKGSLVDSEAVEKLVQLMLSDSDKKIDLAGRSALAGVIAATDKVECLNQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLILLRALDKLPVNLPALQMCHIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRSSEVAHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTADLSQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPSTVLSGAQRDVGSGKSSLHRNTVLERSSQSGTTFEKASDGPIGEGNSPKLIVKITNRGRSPAHSVSGGSFEDPSIMNSRASSPPLSEKHDQFDHSKSDTCQPNITGDVNVGPWQNSDVKDMVTGSDDGDGSPAAVHGEDRCQAVKDIKVSRANDHKNGKLHEASLSSINALIESCIKCSEANMPTSLMDNVGMNLLASVAAVEMSKSDFVLPSDTQGNISAVDRTSRSSDCKVKASYPEEDARDNIQSNDAMDVSEQGVITTSFGAKIVDGRCASQSEEKPVGDLSGHSKSSGVNLQPTAVPFPDGCIKMNEAGGPISPSRMPEKGSEMEGAKPVEDSKAADVVDGDSSSKSKPKPSSSLPDGSVVGDGISNREVEADVVNDPLHRLQEVDGNSNDRLHGVSTSDRRLSSKLNCDSAKLRNDELLQASGSSSNLISVSASEMKAEKNDETNTSADVKLEKPQSDLDPMVSESRSVGGSCSATNLEGEHMEENLESKFNKEKNGGQTHHWQSILTPVRETEQPLPSKRSKLADAEAEEAEESTSTAADAGSMSASGAPDMDAKLEFDLNEGFNVDDGKCSEPSSIPASITTVQLISPLPFPVSISNVASNIPASITVAAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKILEMPLGVPTASLPDAAASKISRPPLDIDLNVPDERTLEDMNPQIFSEEVASKSGLVNNRDLARDIGSTHGRCSGGLDLDLNRVDDAPDPSSFSLNNCRRIETPLSVKSSTVRLNDKVNFHRDFDLNGPIADESTTEPSIFPQHARSHMPSQPTVSGLWMNNAEIGNFPSWFPPGNAYSAVAIPSIMPDRAEQAFPVATNGPPRILGPTSGTSPYSTDVFRGQVLSSSPAVPFPSTFQYPVLSFGNSFPLPSATFSGNATTYVDSSSGGRLCFPAVASQFLAPPGAVSTHYPRPFVVSHLDGSNNTSSDSSRKWGRQGLDLNAGPIVPDVEGREESSSLVPRQLSVASSQATTEEHMRIYQPAIGMMKRKEPEGGWDGYKQSSW 1980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 577583 588139 - CmaCh11G001080.1 Cma11g00108 302617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1408 1422 - -
Cma11g00108 1980 SUPERFAMILY Ribosomal protein L29 (L29p) 205 272 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1011 1026 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1336 1350 - -
Cma11g00108 1980 CDD Ribosomal_L29_HIP 208 269 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1445 1459 - -
Cma11g00108 1980 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 674 783 IPR035441 -
Cma11g00108 1980 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 362 1980 - -
Cma11g00108 1980 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 183 269 IPR010729 GO:0003735|GO:0005761|GO:0006412
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1319 1334 - -
Cma11g00108 1980 ProSiteProfiles BAH domain profile. 408 523 IPR001025 GO:0003682
Cma11g00108 1980 MobiDBLite consensus disorder prediction 554 580 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1463 1477 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1383 1407 - -
Cma11g00108 1980 ProSiteProfiles TFIIS N-terminal domain profile. 686 772 IPR017923 -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 776 903 - -
Cma11g00108 1980 Pfam TFIIS helical bundle-like domain 720 769 IPR017923 -
Cma11g00108 1980 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 636 773 IPR035441 -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1380 1423 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 776 1056 - -
Cma11g00108 1980 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 362 1980 - -
Cma11g00108 1980 SMART TFS2_5 692 771 IPR003617 GO:0005634
Cma11g00108 1980 Gene3D - 178 277 IPR038340 -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1898 1949 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 583 603 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 548 603 - -
Cma11g00108 1980 SMART BAH_4 408 523 IPR001025 GO:0003682
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1038 1056 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1934 1949 - -
Cma11g00108 1980 Gene3D - 396 628 IPR043151 -
Cma11g00108 1980 CDD TFIIS_I 694 770 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1267 1290 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1440 1499 - -
Cma11g00108 1980 Pfam BAH domain 410 517 IPR001025 GO:0003682
Cma11g00108 1980 MobiDBLite consensus disorder prediction 915 977 - -
Cma11g00108 1980 MobiDBLite consensus disorder prediction 1214 1350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00108 - - - bhj:120071278 2707.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00141 Cma11g00108 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01979 Cma-Chr1:12738695 Cma11g00108 Cma-Chr11:577583 3.33E-10 dispersed
Cma09g00097 Cma-Chr9:433569 Cma11g00108 Cma-Chr11:577583 6.45E-09 dispersed
Cma11g00108 Cma-Chr11:577583 Cma14g00633 Cma-Chr14:3137006 2.87E-93 dispersed
Cma15g00172 Cma-Chr15:786836 Cma11g00108 Cma-Chr11:577583 3.85E-06 dispersed
Cma10g00141 Cma-Chr10:631032 Cma11g00108 Cma-Chr11:577583 0 wgd
Cma11g00108 Cma-Chr11:577583 Cma11g01414 Cma-Chr11:9291935 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g703 . . . . . Bpe13g00257 Bma06g00204 . . . Cma10g00141 Cma11g00108 Car10g00133 Car11g00107 . . . Bhi02g00411 . . . Hepe09g0182 . . . . . . . . . . . . . . . . . . . . Bda14g00820 . . . . . . . . . . . . Cpe18g00832 . . . . . . . . . . . . . . Lsi06g01531 Csa01g00171 Chy02g02560 Cme02g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35774 PF01426 BAH 4.30E-08 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00108 Cma_Chr11 FPKM 24.790339 27.001167 21.759617 21.233576 20.639618 20.298092 21.632988 23.747667 20.44006 21.836823