Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00111 ATGAGTACCTCTCTATCTCTAGTGGCTATAAAAAAAGATTGGTCCTCTTTCCTTGGCCTCCCCTTTTGTTTGTTCATTATCCTCTTCTCCCACAGTTTCATTCCCAGCAGAGAGAGAGAGAGAGAGATGGGAAATTGCCAAGCCATTGATGCAGCAACACTTGTGATACAACACCCAAGTGGGAAAGTTGACAAACTATATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTTATCTCCACCACCATGGTTACACCGAATGAAAGTTCTAATAACAATGAAACCAGCAAGGTTGAGAAAAAGGAGAATGAAGCCAGAAAGGTTGAGAAAAAGGAGAATGAAGCCAGAAAGGTTGAGAAAAAGGAGAATGAAGGCAGTAGTAATTCGGTTCGTTTAACTAGAATCAAGCTTCTTCGCCCAGCTGACACGCTTGTTCTTGGCCAAGTTTACAGGCTCATCACTTCTAAAGAGGTTATGAGTGGTTTATCCGCAAAGAAACAAGCAAAGGTTAAACAAAGCCAGTTAGAAGCCGCTGAGAAGGCAGGGAGGAGGAAAGAACGTGCAGCCAGAGGCTCAGATTCAGCAGCCACCGCCGCAGCTGGAAGATCTGTATCTGAAGATCCTTTTCAGGCGACCAAACACGAGAAGAACAACAGACCAAGGACAAGTACATCGACAACCTCGGCCATAGCCAGGTCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGATGAGAAGCCAAATGAGCTTTTTAATTCAAGAAGAGAAATTCCTTCAAGAGCAGATCTGGAAGCAAAACAGCATAAAACCGTGCATAGGAAAAGCAGGGGTTCATCTCTCGAGTTCTTTAAAGCTTACAACTCGGGAGAACAGTTGAAGTTGAAGTGA 924 43.94 MSTSLSLVAIKKDWSSFLGLPFCLFIILFSHSFIPSREREREMGNCQAIDAATLVIQHPSGKVDKLYWPVTAREIMKMNPGHYVALLISTTMVTPNESSNNNETSKVEKKENEARKVEKKENEARKVEKKENEGSSNSVRLTRIKLLRPADTLVLGQVYRLITSKEVMSGLSAKKQAKVKQSQLEAAEKAGRRKERAARGSDSAATAAAGRSVSEDPFQATKHEKNNRPRTSTSTTSAIARSRTWQPSLHSISEADEKPNELFNSRREIPSRADLEAKQHKTVHRKSRGSSLEFFKAYNSGEQLKLK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 600134 603062 + CmaCh11G001110.1 Cma11g00111 302620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00111 307 MobiDBLite consensus disorder prediction 94 137 - -
Cma11g00111 307 PANTHER EXPRESSED PROTEIN 118 255 - -
Cma11g00111 307 PANTHER EXPRESSED PROTEIN 43 117 - -
Cma11g00111 307 MobiDBLite consensus disorder prediction 254 288 - -
Cma11g00111 307 MobiDBLite consensus disorder prediction 230 253 - -
Cma11g00111 307 MobiDBLite consensus disorder prediction 170 288 - -
Cma11g00111 307 PANTHER DUF4228 DOMAIN PROTEIN 118 255 - -
Cma11g00111 307 PANTHER DUF4228 DOMAIN PROTEIN 43 117 - -
Cma11g00111 307 Coils Coil 100 130 - -
Cma11g00111 307 Pfam PADRE domain 43 254 IPR025322 -
Cma11g00111 307 MobiDBLite consensus disorder prediction 103 136 - -
Cma11g00111 307 MobiDBLite consensus disorder prediction 181 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00111 - - - cmax:111465553 434.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00111 Cma13g00903 CCT
Cma11g00111 Cma18g00150 CCT
Cma11g00111 Cma13g00903 ECH
Cma11g00111 Cma18g00150 ECH
Cma10g00143 Cma11g00111 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00143 Cma-Chr10:651715 Cma11g00111 Cma-Chr11:600134 1.23E-103 wgd
Cma11g00111 Cma-Chr11:600134 Cma13g00903 Cma-Chr13:7242728 3.54E-53 wgd
Cma11g00111 Cma-Chr11:600134 Cma18g00150 Cma-Chr18:766600 2.01E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g700 Blo04g00743 Blo16g00213 Bda06g00581 . Bpe12g00583 . . Bma12g01026 Cmo13g00929 Cmo18g00118 Cma10g00143 Cma11g00111 Car10g00135 Car11g00109 Sed08g0153 Cpe20g00226 . Bhi02g00405 Tan09g2212 Cmetu10g1484 . Hepe09g0180 . . Cla06g01643 Cam06g1827 Cec06g1875 Cco06g1882 Clacu06g1786 Cmu06g1727 Cre06g2546 Cone2ag0886 Cone16ag0124 Cone13ag0125 Cone19ag0129 Lsi02g00352 Csa01g00828 Chy12g01289 Cme12g01715 . Blo15g00279 . Bda14g00822 Bpe07g00822 Bpe15g00628 . Bma08g00179 Sed08g2533 Cmo10g00150 Cmo11g00113 Cma13g00903 Cma18g00150 Car13g00743 Car18g00144 Cpe09g01043 Cpe18g00830 Bhi08g01578 Tan05g2036 Cmetu12g1016 Lac10g0424 Hepe07g2246 . . Cla01g01392 Cam01g1453 Cec01g1489 . Clacu01g1477 Cmu01g1372 Cre01g1288 Lsi06g01529 Csa01g00173 Chy02g02558 Cme02g01946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001603 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00111 Cma_Chr11 FPKM 5.099957 5.286623 7.352075 8.183925 13.024914 11.883447 13.437286 2.358731 2.380769 2.448079