Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00115 ATGCGCCTCTTCTTCAGCGATTGTTTGGTTGGAGGCTGCGATGGCTCTGTTCTTGTTTCATCCAATGTCTTCAACCACGCCGAGCGCGATGCTGAACTCAACCGCGATCTTCCTGGTGATGCCTTTGACGTCGTCACTCGAGCGAAAATTACCTTAGAGCTCTCCTGCCCTGGCATCGTCTCTTGCTCCGACGTGTTAGCGCAGGCGACTAGAGATCTCATCGCGGCCGCAGGCGGACCATCGTACAAAGTTGAGTTAGGGCGAAAAGATAGCCTCGTCTCCAAAGTTTCAGACGTGGAAGGCAACATTCCAAAACCGAATCAATCGATCGACGAGTTGATCAAGCTATACACGGCGAAAGGCTTCACGATTCAAGAAATGGTAGCGCTATACGGCGGACGCACGATCGGATTCTCAAATTGCAGGGAATTCAGCGACCGGCTCTTCAACTTCGGCAAAAACACACCAACAGATCCTGAGATTAATTCGAAATACGCGGAGGCGTTGAAGAAGTCCTGTGCCGATTACGAGAAGAATCCAGCAAGTTCGGCGTACAGCGACCCTGTAACGCCAGGGAAGTTCGACAACGTATACTACCAGAATCTGCTGAGAGGAATGGGACTGTTGGCGTCGGATCACGCGCTGGTGAAGGATCCGAGGACAAGGAAATTCGTGGAGATGTATGCAGGAAACCAGGCATTATTCTTCAAGGATTTCGGAGAGGCGATGGAGAAGATGAGCGTTCGAGAGGTGAAAACTGGCGGGAAAGGAGAAGTGAGGACAAGATGCGATGCGTTCAATTCAATCAACCATTAA 816 50.86 MRLFFSDCLVGGCDGSVLVSSNVFNHAERDAELNRDLPGDAFDVVTRAKITLELSCPGIVSCSDVLAQATRDLIAAAGGPSYKVELGRKDSLVSKVSDVEGNIPKPNQSIDELIKLYTAKGFTIQEMVALYGGRTIGFSNCREFSDRLFNFGKNTPTDPEINSKYAEALKKSCADYEKNPASSAYSDPVTPGKFDNVYYQNLLRGMGLLASDHALVKDPRTRKFVEMYAGNQALFFKDFGEAMEKMSVREVKTGGKGEVRTRCDAFNSINH 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 619576 620391 + CmaCh11G001150.1 Cma11g00115 302624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00115 271 PANTHER - 1 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 ProSiteProfiles Plant heme peroxidase family profile. 1 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 125 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 59 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 185 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 40 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 201 218 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 78 93 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Plant peroxidase signature 241 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 Pfam Peroxidase 1 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 CDD secretory_peroxidase 2 266 IPR033905 GO:0004601|GO:0042744
Cma11g00115 271 Gene3D Peroxidase, domain 2 104 246 - -
Cma11g00115 271 PANTHER PEROXIDASE 41 1 270 - -
Cma11g00115 271 Gene3D - 1 267 - -
Cma11g00115 271 SUPERFAMILY Heme-dependent peroxidases 1 267 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Haem peroxidase superfamily signature 78 90 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Haem peroxidase superfamily signature 60 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g00115 271 PRINTS Haem peroxidase superfamily signature 126 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00115 Cma-Chr11:619576 Cma11g00189 Cma-Chr11:967469 0 dispersed
Cma11g01161 Cma-Chr11:6725930 Cma11g00115 Cma-Chr11:619576 0 transposed
Cma10g00148 Cma-Chr10:676861 Cma11g00115 Cma-Chr11:619576 1.24E-164 wgd
Cma11g00115 Cma-Chr11:619576 Cma13g00904 Cma-Chr13:7246240 4.53E-135 wgd
Cma11g00115 Cma-Chr11:619576 Cma18g00148 Cma-Chr18:760016 1.54E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00115 K00430 - csv:101213178 454.521