Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00123 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATATCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCCCGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGTTACAGAGCCACTTTCCTGATGCGTCTTTCATGGTTTTCAACTTCAGAGAAGGTGGTAAGCGAAGTCAAGTTTCTGATGTACTGAGTCAGTATGACATGACAGTTATGGACTATCCCCGGCAATATGAGGGATGTCCTTTATTGCCATTGGAGATGGTTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCGCTGCAGGGTCAACAGAATGTGTTATTGATGCATTGTGAAAGGGGGGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGTTGTACAGAAAACAGTACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTATCTCCTTTAAACCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAACTTAGGTTCTAATTGGCCTCCAGCAGATACACCCCTAGTTTTGGATTGTTTAATACTTAGAGTTCTACCTCTTTTTGACGGGGGAAAAGGGTGTAGGCCTGTTGTGCGTGTCTATGGTCAAGACCCCTCAATACCGGCCGATAGAACTTCAAAGCTTTTATTTTCAACATCTATCAACAGAAAATATATCCGAAACTACCAACAGGAAGAGTGTATGCTGGTGAAAGTTGATATTAATTGCCATATTCAAGGGGACGTAGTTGTTGAATGCATCCATTTGGATGAAGATCTAGTACACGAGGAGATGATGTTTAGAGTTATGTTTCACACAACATTTGTTAGATCAAATATTATAATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCAAGGGACCAGCTCCCTAAGGACTTCAGAGTTGAGGCACTCTTTTTGGGTGCTGATGCTGATGTCGTTGTCCCCAATCTTACCACAACCTTTGATGATGATGATGAAGATGAAAATGAAGCTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTTGAAGAGATTTTCAGTAATGCAATGGATGGGCAGGAAGCAAAGGGATCCAATCATCCTCAATTGATCAATCGTGCAGACCGTAAAGCAGATTGGAAGGAGGACTTTGATCCGCCTGCATTCCAAGATTGTGCAACGGATGATGGAAATCTCAAGCATGTGAAGAAATCAGATTTTGATGCAGTGAAGGACATTGCTGTGGATGATGTGAAGTACAAGCTGGATGAAAATATATATTCCGACCTTAATGCTGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTCCTGGTTGCTGCTGCTAATGTCTTGACTCATGTGAAAGCCCAGGGGTTGGTAGATGCCGCATATGGAAAAGTTGAAGATAATGAAGAAAAGGATGATGGAAGAGATGCTGCACCTGCGAAATTGGGAAACAAGGTTCTGCAGAAAAAGTTGAGTGCTGATGGTTCTAGACAAAAATCTGAAAAATTGCAAACACCAATCCCCAAGAAACTGCCTATTCCAAGTGGAAAACCTACCACTGATATGGTTTCAGCCAAACAGAAAGTCAAGCAACAAGAGACTCAAGGTTTTTCTGCAAAACAAGCAAAGCCGAATGCAGTTTCTAGGTGGATTCCTCCTAACAAAGGCTCTTATATGAACTCTATGCATGTTTCCTATCCTCCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCCAGTATTGCACCATCAAAGGATACAAGTGCAAATTCCAAAACAAAGGGTTCTGCCACCCTTGATTCTCTGGTTTCTACATATTTATTTAGTGAACGAAAAAATCAAAAAGTGGATTCTGCATGGTCTTCACACTCTGCACCTGGGGAACTCATGCTTGGCGCACCATCTCCAGTTGAGTCAATTGAGGAAGCAGATTCTTCCTCTGAAACTCCAAAACCATCACAAAGTGATTCACAACTTGAAGTAACACCTCCTCCCCTTCCCACAAAACCTCCATCTCCACATTTACCATCACTCCCCAGTGCAAATGCAATACCTCCTCCACCTCCTCCACCACCCCCATCCTTGCACCATATGGAGTCGACATACTCTGTTCCACCACTTTCTGTGTCTTTAGCACCACCACCCATTGCTAACTCATCAAAGGCAGTGACTCCCCCTCTCCCTCCCCCTCCTCCTCCATTCAGTAGGCAGAACAGTGAGATGCTTTTGCCCATTTCTTCTACACAGTCATCATGGGAGCAAAGATATTTTTCTGTTTCTAGTGTAAAGGTGGCTGGTTCTGTACCTCCTCCACCTGCACCCCCATCTCGACCTCGACCTCACTCTGTGGCCTTGCCATCTACATTAAAGAATATTGCAAGTATTCCTCGTGTACCTGTTGTATCTCCTCCTTCAGCATTTCTTTCATTGGCATATAAAGGTATATTGCTATCATCACCCCCACCTCCCCCTCTTTCTAGGATACATGAACTACTTGCTCCACCATCTTCACCACACCTGCCTGCTCCAATATATGGTGGTAAAACACCCCCACCTATTACTTCAGTTCATAGTGCACCCCCACCCCCACCCCCATTAATGCAAGGGGCACTTCCTTCACCATCTCCAGGGGAAGGAACTCCATCCCCACCCACGCATGGTGTATCTCCAACACTACCTTTATTACATGGAGCACCACAGCCTCCCCCACCACCTCCTCCCCCACCACCTTCAATTTATGGAGCACCTCCTCCTCCACCCCTTCCAATGTTTGGAGCACCCCCTCCTTTGATCCCTCCCATGCAAATGCAGAGGAGACCTCCTACACCTCCTCCTCCGCCTCCAATGCATGGGTCTCCTCCACCAATGAATGCAACTCCTCCACCACCACCGCCTCCCATACGTGGGGCTTCTCCACCACCCCCACCTCCACTAATGCATGTGGCTCCTCTACCATCGCCACCGCCACCAATGCTTGGGAATCCTCCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCAATGCACGGGAATCCTCCACCACCCCTGCCACCTCCACCAATGCATGGTGCTCCTCCACCACCCCCGCCACCTCCACCAATGCATGGGAATCCTCCACCACCCTCGCCACCTCCACCAATGCAAGGGAATCCTCCACCACCTACCCCTCCACCAATGTGTGGGGCTCCTCCACCCCCACCGCCACCCTCAGCCGGGTATGGTGGAGCCCCACCACCACCTCCCCCACCCGTGGGTGGTGGAGTCCCCGCACCCCCTCCACCACCCTGGGTTGGTGGAGCTCCCGCACCCCCTCCACCACCTGGGGGTGGTGGAGCTCCCCCACCCCCTCCACCACCTGGGGGTGGTGGAGCTCCTGCACCCCCTCCTCCTCCAGGTGGTCATGCTCCAGCCCCACCTGGACCTCCAGGTGGTGGACCTCCTCCACCTCCACCACTAGGTTCAAAAGGAGGAGCTGTTGCACCTCCTGACCCAAGAGGTTTGTCTGCTGGAAGGGGGCGTGGGCTAACACGCTCAGCTACTTCTGCACCTCGAAGGTCCTCCTTGAAGCCTCTACATTGGAGCAAGGTTACAAGAGCTCTGCAAGGGAGCTTATGGGAAGAACTACAGAGATATGGCGAGACTCAAATTGCATCAGAGTTTGATGTGACCGAGATAGAGACTCTCTTTTCTGCAACTGTTTCCAAACCTGCTGATGGAGGCAAATCTCGAAGGAAGTCTGCTGGATCCAAAACTGACAAAGTTCATCTGATTGACCTCAGAAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGATGAATCAGTATTAGACGTTGATCAGGTGGAAAATCTCATAAAGTTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATAAGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGGGTAGAGTCAAAGATGAAAGTGTTTTCTTTTAAGATTCAGTTCGGCTCTCAGTTATCAGAATTTAAGAAGAGTTTGAATACTGTCAACTCGGCTTGTCATGAGGTTAGGAATTCTGCCAAACTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACGGCGAGGGGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTCCTTGCTTCGAAGACACCAGCTCTTCTTAAATTTCATTTGGACCTGGGTAGCCTAGAGGCAGCAACCAAGATACAATTGAAGTCTTTAGCGGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAATTTGTTGCTTCTGAAAATGATGGCCCAGTCTCTGAAATTTTTCGAAAGACGTTGAAAGAATTCATTGCTACTGCTGAGACAGAGGCGGCGTCGGTGACAAATCTGTACTCTGTTGTGGGTAGAAATGCAGACGCACTTGCATTATATTTTGGTGAGGACCCGGCTCGTTGTCCATTTGAGCAGGTTATAGTGACATTGTTGAACTTTATGAGATTATTTCGGAAAGCCCACGAAGAGAACTGCAAACAGGCTGAATTGGAAAAGAAAAAATCCGATAAGGATGCTGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGCGTGAAATAG 4863 47.25 MALFRRFFYRKPPDRLLEISERVYVFDCCFSPEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGGKRSQVSDVLSQYDMTVMDYPRQYEGCPLLPLEMVHHFLRSSESWLSLQGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQLRYLQYISRRNLGSNWPPADTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSIPADRTSKLLFSTSINRKYIRNYQQEECMLVKVDINCHIQGDVVVECIHLDEDLVHEEMMFRVMFHTTFVRSNIIMLNRDEVDVLWDARDQLPKDFRVEALFLGADADVVVPNLTTTFDDDDEDENEAGAASPEEFFEVEEIFSNAMDGQEAKGSNHPQLINRADRKADWKEDFDPPAFQDCATDDGNLKHVKKSDFDAVKDIAVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAAANVLTHVKAQGLVDAAYGKVEDNEEKDDGRDAAPAKLGNKVLQKKLSADGSRQKSEKLQTPIPKKLPIPSGKPTTDMVSAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIAPSKDTSANSKTKGSATLDSLVSTYLFSERKNQKVDSAWSSHSAPGELMLGAPSPVESIEEADSSSETPKPSQSDSQLEVTPPPLPTKPPSPHLPSLPSANAIPPPPPPPPPSLHHMESTYSVPPLSVSLAPPPIANSSKAVTPPLPPPPPPFSRQNSEMLLPISSTQSSWEQRYFSVSSVKVAGSVPPPPAPPSRPRPHSVALPSTLKNIASIPRVPVVSPPSAFLSLAYKGILLSSPPPPPLSRIHELLAPPSSPHLPAPIYGGKTPPPITSVHSAPPPPPPLMQGALPSPSPGEGTPSPPTHGVSPTLPLLHGAPQPPPPPPPPPPSIYGAPPPPPLPMFGAPPPLIPPMQMQRRPPTPPPPPPMHGSPPPMNATPPPPPPPIRGASPPPPPPLMHVAPLPSPPPPMLGNPPPPPPPPPPPPPPMHGNPPPPLPPPPMHGAPPPPPPPPPMHGNPPPPSPPPPMQGNPPPPTPPPMCGAPPPPPPPSAGYGGAPPPPPPPVGGGVPAPPPPPWVGGAPAPPPPPGGGGAPPPPPPPGGGGAPAPPPPPGGHAPAPPGPPGGGPPPPPPLGSKGGAVAPPDPRGLSAGRGRGLTRSATSAPRRSSLKPLHWSKVTRALQGSLWEELQRYGETQIASEFDVTEIETLFSATVSKPADGGKSRRKSAGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDNLGKCEQYFLELMKVPRVESKMKVFSFKIQFGSQLSEFKKSLNTVNSACHEVRNSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLKFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVRQEFVASENDGPVSEIFRKTLKEFIATAETEAASVTNLYSVVGRNADALALYFGEDPARCPFEQVIVTLLNFMRLFRKAHEENCKQAELEKKKSDKDAEMENAKGISLTKKSVK 1620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 655413 671728 + CmaCh11G001230.1 Cma11g00123 302632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00123 1620 Gene3D Protein tyrosine phosphatase superfamily 14 205 IPR029021 -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 795 815 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 1593 1620 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 1593 1610 - -
Cma11g00123 1620 PANTHER FORMIN-J 1063 1612 - -
Cma11g00123 1620 PANTHER FORMIN-J 1 1070 - -
Cma11g00123 1620 Coils Coil 1583 1603 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 671 693 - -
Cma11g00123 1620 CDD PTP_PTEN-like 16 190 - -
Cma11g00123 1620 SMART PTEN_C2_2 198 1320 IPR014020 -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 694 727 - -
Cma11g00123 1620 PRINTS Proline rich extensin signature 799 811 - -
Cma11g00123 1620 PRINTS Proline rich extensin signature 865 886 - -
Cma11g00123 1620 PRINTS Proline rich extensin signature 892 908 - -
Cma11g00123 1620 PRINTS Proline rich extensin signature 911 928 - -
Cma11g00123 1620 PRINTS Proline rich extensin signature 930 955 - -
Cma11g00123 1620 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 798 812 - -
Cma11g00123 1620 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1284 1609 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 926 1189 - -
Cma11g00123 1620 Gene3D - 206 336 - -
Cma11g00123 1620 Coils Coil 1489 1509 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 867 919 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 497 554 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 732 748 - -
Cma11g00123 1620 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 750 768 - -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 644 773 - -
Cma11g00123 1620 Gene3D Formin, FH2 domain 1207 1594 IPR042201 -
Cma11g00123 1620 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1210 1608 IPR015425 -
Cma11g00123 1620 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cma11g00123 1620 SMART it6_source 539 1618 IPR015425 -
Cma11g00123 1620 Pfam Formin Homology 2 Domain 1215 1582 IPR015425 -
Cma11g00123 1620 MobiDBLite consensus disorder prediction 854 1220 - -
Cma11g00123 1620 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00123 Cma13g01093 CCT
Cma10g00209 Cma11g00123 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00123 Cma-Chr11:655413 Cma13g01093 Cma-Chr13:8230983 0 dispersed
Cma01g00804 Cma-Chr1:4326581 Cma11g00123 Cma-Chr11:655413 0 wgd
Cma10g00209 Cma-Chr10:925548 Cma11g00123 Cma-Chr11:655413 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00123 - - cpep:111792358 1579.69