Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00125 ATGGGGGGAGAATTCTGTACCACTCCATTCCCCTCCTCCCTTTTCCTCCTCTCTCTACTCCTCTTCTTCTCTCTCTCCTCTGCTATTCATCCCTCTTTTGTTCCCTTTTCCCCTCGCGACAATTACTTGATCGACTGCGGCTCGCCGGGGCAAACCCATCTCGACGACGGCCGGATTTTCAAATCCGATCGCGAATCGACTTCTCTCCTTGCCACTGAAGAAGACGTCCAAACCTCAATCGATTCCATTCCCGTAAACGCCACTGTTTCGCCTCTGTCTTCTTGGGCATTGCCTCTCTTCCGCACCGCCAGAATCTTCCCAAGCGATTCCACTTACACTTTCTTCATTTCTCAGGCCGGCCGCCATTGGATTCGCCTCTATTTTTACCCTCTTCCTCACCCTAATTATAATCTCTCCGATTCCGTTTTCACTGTCACAACAGACAGTTTCGTCCTCCTCCACGATTTCTCAATCAAGGCCGACTCCAAAATCGTCTCCAAGGAGTATCTAATCAACATCACTACTGATCGATTCTCCCTTCAATTCAAACCAAAGAAGAATTCATCGGCGTTCATCAATGCCATCGAAATCGTCTCCGCCCCAGATCCTCTGTTTTCCGATTCCGCCACCTCTGTTTCTCCGGTGGGGTTTTTTAGCGGATTGTCGCATTTCGCTCTGGAAATCTGCTACCGTGTTAATGTCGGAGGGCCTCAGATTGTTCCTAGAAACGATACGTTGTCAAGAACGTGGGAAACAGATGATGCTTATAACAGATTCCCACAGGGTTCTAAGAACGTTTCTGTGGATTTGAACTCGATTAAATACCCTGGAAACGACTTGACTCCATTGATTGCTCCATATTGGGTTTATGCAACGGCGGAGGATCTGCAAGATTCAAAAACAATGCAAGTAAGCTTTAATATGAGCTGGAGTTTTAATGTGGAGCAGAGCTATTCATATTTGATCAGACTCCATTTCTGTGACATTGTGAGCTCCGTCCTCAACACTTTGTACTTCAATGTTTACATCAACGGGATGATGGGTATTGCAGATCTCGACCTCTCTCAGCTCACCGGCGATCTTTCAACTCCTTACTACAGAGACCTCGTCCTCAATGCCTCCTCCATCAAAAACAACACCATCATGATTCAGGTGGGTCCATCGAATCTGAATTCAGGCCTTCAAGATGCAATCCTTAATGGTGTAGAGATCATGAAGATGAGCAACGATGCACAGAGCTTGGATGGGTTGTTTTCAGTGGATGGAAAATACATGGGAGGCTCAAGATTTAGCGCCATGAAGATTGCAGCTATTGTGGCTTTGGGAATGGGAGTGATGGCCGTTCTGTTTCTTGGAGTAATGTTCTTGAGATGGCAGAAAAGGCCTCAAGGATGGGAGAAGAGGAAGAGCTTCTCTTCATGGCTTCTCCCGTTGCATTCAAATCAATCCAGTTTCTTCTCTAGCAAAAGCAGCTCCAGAAGATCAAGCGTTTTTGGGTCTCGCCGGAGCAAGACTGGGTTCTCAGGTATCTACACCAATGTCGGCCTCGGTCGTTTCTTCTCCCTCAATGAGTTACAGGTTGCGACGCATAATTTCGACGAGAAAGCAGTGATCGGCGTTGGTGGGTTCGGCAAAGTCTACGTCGGAGCTTTAGAAGACGGAACCAAACTCGCTATCAAACGAGGAAACCCTAGCTCTGATCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTCTCCAAACTCCGCCATCGCCATCTCGTTTCCCTAATCGGTTACTGCGACGAGCAATCCGAGATGATTCTTGTGTACGAATACATGGCCAATGGCCCATTTCGCGACCATTTATACGGCTCAAATCTCCCTCCATTGTCGTGGAAACAGAGGCTCGAAATCTGCATAGGCGCCGCCCGTGGGCTGCACTATCTCCACACCGGTGCAGCTCAGGGCATCATCCACCGTGATGTGAAGACCACAAACATTCTCCTCGATGAGAATTTTGTTGCTAAAGTCTCTGATTTTGGACTCTCGAAAGCCGCCCCATCGCTGGAACAGACCCATGTCAGCACTGCAGTGAAAGGAAGCTTCGGTTACCTCGATCCAGAGTACTTCAGACGACAACAATTGACTGACAAATCGGATGTTTACTCATTTGGGGTTGTTCTATTTGAAGTTCTATGCGCGAGACAAGTGATAAACCCGACATTGCCGCGAGAGCAGGTGAATTTGGCGGAGTGGGCAATGCAGAATTACAGAAAAGGAAAGCTAGAGAAGATAATTGATCCTGTTATTAGCAGCTCAATAGTACAGGGATCGCTGAAGAAATTCGTGGAAGCAGCAGAGAAATGCTTGGGTGAATATGGCGTGGACAGGCCGAGCATGGGAGATGTGCTGTGGAACTTAGAGTATGCTTTGCAGCTGCAAGAGGCAGTGTCAGAGCTGGAGGACCCAGAGGAAGACAAGTGCGAAGGGCTGGCGGCTTTGGACAAAGGAAACGACGATGAACCGAAAGGAAAAGGCAGTGCTTCTGCGAGTAATGATGCTTCTGAAGTGTCAGTGAGTGCTCCTCTGTTTGCAGAGGTTCGAAATTTTCAGGGAAGATGA 2607 47.95 MGGEFCTTPFPSSLFLLSLLLFFSLSSAIHPSFVPFSPRDNYLIDCGSPGQTHLDDGRIFKSDRESTSLLATEEDVQTSIDSIPVNATVSPLSSWALPLFRTARIFPSDSTYTFFISQAGRHWIRLYFYPLPHPNYNLSDSVFTVTTDSFVLLHDFSIKADSKIVSKEYLINITTDRFSLQFKPKKNSSAFINAIEIVSAPDPLFSDSATSVSPVGFFSGLSHFALEICYRVNVGGPQIVPRNDTLSRTWETDDAYNRFPQGSKNVSVDLNSIKYPGNDLTPLIAPYWVYATAEDLQDSKTMQVSFNMSWSFNVEQSYSYLIRLHFCDIVSSVLNTLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASSIKNNTIMIQVGPSNLNSGLQDAILNGVEIMKMSNDAQSLDGLFSVDGKYMGGSRFSAMKIAAIVALGMGVMAVLFLGVMFLRWQKRPQGWEKRKSFSSWLLPLHSNQSSFFSSKSSSRRSSVFGSRRSKTGFSGIYTNVGLGRFFSLNELQVATHNFDEKAVIGVGGFGKVYVGALEDGTKLAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVSDFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAMQNYRKGKLEKIIDPVISSSIVQGSLKKFVEAAEKCLGEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPEEDKCEGLAALDKGNDDEPKGKGSASASNDASEVSVSAPLFAEVRNFQGR 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 676663 680108 - CmaCh11G001250.1 Cma11g00125 302634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00125 868 Pfam Malectin-like domain 44 407 IPR024788 -
Cma11g00125 868 Gene3D Transferase(Phosphotransferase) domain 1 608 825 - -
Cma11g00125 868 Gene3D Phosphorylase Kinase; domain 1 502 607 - -
Cma11g00125 868 Pfam Protein tyrosine and serine/threonine kinase 536 741 IPR001245 GO:0004672|GO:0006468
Cma11g00125 868 Gene3D - 41 201 - -
Cma11g00125 868 Gene3D - 224 410 - -
Cma11g00125 868 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Cma11g00125 868 SUPERFAMILY Protein kinase-like (PK-like) 506 803 IPR011009 -
Cma11g00125 868 ProSiteProfiles Protein kinase domain profile. 532 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00125 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Cma11g00125 868 SMART serkin_6 532 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00125 868 CDD STKc_IRAK 538 803 - -
Cma11g00125 868 PANTHER OS03G0759600 PROTEIN 31 839 - -
Cma11g00125 868 MobiDBLite consensus disorder prediction 822 838 - -
Cma11g00125 868 MobiDBLite consensus disorder prediction 817 852 - -
Cma11g00125 868 PANTHER OS07G0166700 PROTEIN 31 839 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00125 Cma-Chr11:676663 Cma17g00823 Cma-Chr17:6448674 0 dispersed
Cma11g00125 Cma-Chr11:676663 Cma01g01189 Cma-Chr1:8611981 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68870 PF12819 Malectin_like 1.30E-37 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00125 - - cpep:111793369 1677.14