Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00126 ATGGCTGAGCCTTCGAACAGTTTGCCCGTGGATTCTCTCGGCGACATCGACGACTACATTTCGACCAATGAAGGAGAGGGTTCATTAACATGGAACATGTTTAGTCATGTTTTTGAATTCGTACAAAACGGGAACCGAGCATTTAGAGATAATAACTTTGAAGAGGCAATCAAGTGTTACTCAAGAGCAAATAACATCAAACCAGGTGATCCGGTTATTCTCAACAACAGAAGTGCTGCTTATATCAGGATTAGTCGATTCCTCAAAGATAGACCACCGTCTGCTTCTGAATATCGACCATTGAATGGGTTGGATCCTACAGTACTTGCTGAACTTGCACTAAAAGATGCTGAGAAGCTGATGGACCAATGCAGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATTCTCCTAGAAAAATATGACATAGCAAAGGATATTATTCTATCCGGCCTTCAAATTGACCCTCTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGGATAGCTGTGAGTCAGACAGGAAGGGGACGCCATGGGCTACCAGATCGTAGTGATGAATTTGATTGCACCCTTTGTTTTAAGCTTCTTTATGAACCCATCACAACTCCCTGTGGGCATTCTTTTTGCCGTTCTTGCTTATTTCAGTCGATGGATCGTGGTAATAAATGTCCGCTGTGCCGAACAGTTCTTTTTATCAGTTCAAGAACATGTGCAATCAGTGTTACGCTGAGCAACATTATACAGAAGAACTTTCCAGAGGAGTATGCTGAAAGGAAGTCAGAACATGATGGTTTGGCAAATTTTGGTATCGATATAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTCCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCCGGAGGATAATGGAAGGCAATCATCGTATGGGAATGGTTATTGTGGATTCTACAACAGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACCGAGTGTGAGCCTCTTGCAGACGGACGATTCTATCTAGAGATTGAAAGTCGTCGAAGATTTCACATTATTCGATCTTGGGATCAAGATGGGTATCGAGTGGCAGAGATCGAATGGGTCAATGATGTAGCTCCCGCAGAAGGGACAAGAGAGCAAGCAGAAGAAATGACAAATAATGCAGCAGAGTACGCTCAGTCATGGATAAGGAAGGCAAAAGAAGCATCTAGGCGAGATCATAGCAAACACGATAGACTTCTTAATGTGGAAGCAATGATGCCCTCATCACGAGATCCTGAACGGTTCAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGACGGATACAAGAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGGGGCTAG 1443 43.24 MAEPSNSLPVDSLGDIDDYISTNEGEGSLTWNMFSHVFEFVQNGNRAFRDNNFEEAIKCYSRANNIKPGDPVILNNRSAAYIRISRFLKDRPPSASEYRPLNGLDPTVLAELALKDAEKLMDQCSKSVKPYILKANALILLEKYDIAKDIILSGLQIDPLSNPLQASLQRLERIAVSQTGRGRHGLPDRSDEFDCTLCFKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCAISVTLSNIIQKNFPEEYAERKSEHDGLANFGIDIMPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNHRMGMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFHIIRSWDQDGYRVAEIEWVNDVAPAEGTREQAEEMTNNAAEYAQSWIRKAKEASRRDHSKHDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTRERIRRGLVYLKAEEQGG 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 680972 691978 - CmaCh11G001260.1 Cma11g00126 302635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00126 480 Coils Coil 383 403 - -
Cma11g00126 480 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 4 476 - -
Cma11g00126 480 Gene3D - 278 379 IPR046336 -
Cma11g00126 480 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Cma11g00126 480 SUPERFAMILY PUA domain-like 279 473 IPR015947 -
Cma11g00126 480 ProSiteProfiles Lon N-terminal domain profile. 276 475 IPR003111 -
Cma11g00126 480 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Cma11g00126 480 SUPERFAMILY TPR-like 38 161 IPR011990 GO:0005515
Cma11g00126 480 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 474 IPR003111 -
Cma11g00126 480 SMART lon_5 278 475 IPR003111 -
Cma11g00126 480 ProSiteProfiles TPR repeat profile. 37 70 IPR019734 GO:0005515
Cma11g00126 480 PANTHER RING FINGER PROTEIN 127 4 476 - -
Cma11g00126 480 SUPERFAMILY RING/U-box 188 256 - -
Cma11g00126 480 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Cma11g00126 480 Gene3D Tetratricopeptide repeat domain 35 181 IPR011990 GO:0005515
Cma11g00126 480 SMART ring_2 195 232 IPR001841 -
Cma11g00126 480 Gene3D - 408 475 - -
Cma11g00126 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 273 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00126 - - - cpep:111793369 939.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01936 Cma-Chr1:12576426 Cma11g00126 Cma-Chr11:680972 1.57E-20 dispersed
Cma08g00074 Cma-Chr8:388328 Cma11g00126 Cma-Chr11:680972 1.04E-06 dispersed
Cma11g00126 Cma-Chr11:680972 Cma14g00696 Cma-Chr14:3529083 2.01E-16 dispersed
Cma11g00126 Cma-Chr11:680972 Cma09g00129 Cma-Chr9:560335 3.85E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00126 Cma_Chr11 FPKM 7.709504 7.140701 10.324915 9.066126 15.095983 17.117083 15.963222 12.583963 12.039671 13.651998