Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00131 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGTGGCGTTCAGCTTAAGCTTCTGAATGTTGTTCTCCTTATAATACCTTCATTTCTTCGCGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATTTCATGGATTCAATGATGGAGGATCGATCGGAGATTGCCTTCTTTGACGTGGAGACGACTGTTCCGAGCCGGCAAGGGCAGGGATTCACAATTTTGGAGTTCGGAGCAATTCTGGTGTGCCCTCGGAAGCTGGTTGAGTTAGAGAGCTATTCCACTCTCGTTCGACCCTCACATCTCTCCCTCATTTCCTCCTTATCGGTGCGATGCAATGGCATAACTAGAGACGCCGTCCTTTCCTCCCCCACTTTCGCCCAAATTGCCCACAAGGTTTACCACATCCTTCACGGGCGGATATGGGCAGGCCATAACATACTCAGATTTGATTGTGCAAGAATAAGGGAGGCCTTTGCACAAATTGGACAACAAACACACAGGAGTTTGGATGATGTCAGGATGAATCTCGAAGTTCTAAAGTATTGTGCAACTGTCTTGTTTCTGGAATCAAGTCTCCCTGAGAACAATTTGGTTCCTCCAAACGCTGTTACGAGGCGTCGTGCTGGAATATCGTCCCGACACAGAGTTGGTTCGAATAAGAGTACTCACTCGTCGAGTTCAAGGATATCTCTAACAGATGAACAAGGGGAAGCTCATCCGATATTGTCCCTTGTAACTTGCAGCTCTGAAGATGGAACCTCAAATCTGGCTGAATCTGATGCAACTGAATCAGATTCTTTTAACATGAACTCTTTCAGTGACCAAATAACAGGTGAATCACTTGGAACAGACATCAGCATGGAAGAAGAACATGTCTCAGTATCTCCTGAATTCTTGGAGCCAGATCAGGTCTCTATTCCCTCCATCACTGCTTCTTTCATTCCATTCTTTCGTGGCAGCCAAAGAATACAATTATTGCACAATGACGCCTGTTTACTGCTTCTTTGCAATAATCTGAAAGTTCGGTTTGGCATAAGCACAAAATTCACTGATTACGCTGGACGTCCAAGGCTGAGTTTTGTGGTTGATGTACCACCAAGTTTATGCAGGGTTCTTGAAGCATCTGATGGTGTGGCTCAGAGATTATTTTCAGATTCTGGTAGTGGCTCTGAGTGGAGGCCTGTCGTGTTTGTAATGGATATTAAACCTCTTCCTCCACAGTATTCCAAGCGCAGTAAGTGGAGATACAGCCACTTATGCTACAGAGATGTTGAAAAAGGAACCATCAGTTGTTTTGATAAACATAGTTACTCTGTTTTGAACTGGCGTTGTGGGAGTTTTGAGCGGGTTGTGACGATGGAATGCAAAGAGATCAATTCCAACAAGGATTGTGGTGTTGGGGAAAGTAATAGGGGCGGTGGAGGAGCTGGATTTGTTGATAGGAGTAAGGTGAAGATTTTACTGTGTGACAATGACTCTAAGAGTTCACAAGAGGTTTTTACACTTCTTTTGCGATGTTCATATCAGGGTATGGCTTCATTTCATTGCTTTAGACATGTGAAGTTTGTTTTTACAGTCATTTCAGTACGATCAGCTAGACAGGTGATTAATGCCTTGAATGCTGAGGGACCAGATATTGATATCATTCTAACTGAAGTAGATCTACCTATGGCCAAAGGTATGAAAATGCTCAAATACGTCACGCGGGATAAAGAGCTGCGACGTATTCCTGTGATTATGATGTCAGCGCAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAGGCTCGGAGCAGCGGACTATCTCGTGAAGCCTTTACGAACAAATGAGCTATTAAACTTGTGGACTCACATATGGAGAAGACGGCGCATGCTCGGATTGACAGAGAAGCAAATTTTAAATTTCGACTTTGATTTGGCGACTTCAGATCTTAGTGACCGCAATACAAATAGCACTACTTTTCTCTCAGACGACACCGATGATAACACTCATAGGAGCATTAACCCAGAATTGGACATGCCCCATCAGGAAGATATGTCTGCTGTTGCTGATGCCACTGCCATGGACCCTCCTGCGGCTGATTCATTGCAATTTCAGCCTAACGTGCATTTTATCGATGAAAACCATAACGGCCCTAAAAAGTGTAAACTGAAAATCGGAAAAATCAGAGAATCCTCTGCCTTCTTTACATATTGCAAACCTAATGCATTGAAAAGCAACTTTCAAGCACCACCTGCTCAACAATTGAGAAGGGAAGAGAACCCTCTATCATCTGAAACTGATCAACTGGTATCTACTGACCATTGTGAAACTGGAAATGCCTGTACAAGTTATTCGCAAGGAGATGGTTGTCGGAGTAGTATCAGTGTTCCTGATTCTTGGTCTATGGAGATGTCTAGCAGTCCTCAAACGTTCCAATTTTCTCAACCAATGAGCCATGATGAAGAAAAGCTACAATTTTCTCAACAAATGAGCCATGATGAAGAAAAGCTATCTCAGGTGGTTGAGCATCCGAGAGACGAGTCTCGACCCGCTGGATTACTGACTCAAACAAAGTATCCCTTTTATCTGCCTGGAGGCACGAATCAAGTTTTGATACCGCCATCTACAGACTTCTACCACTGCAAGAATCAACATGATGGGCAAAATCATGTGACTGCAGCTGCAATGCCACAGTACAGTCATTTTCATCATTTCCCTCTTGCATCTGGGATGCCCCCATTTCCATATTATCCACTCAATATATGTTTGCAACCCAGTCAAATGCCTAGTTCTCATCCATGGCCGCCATCATTTGGAAATTCATCCTCCACCGAAGTGAAACTGAGTAAAGCTGATATAAGAGAGGCTGCTTTGATTAAATTTAGACAAAAGAGGAAAGAGCGATGCTTTGATAAGAAAATTAGGTACGAAAACCGTAAACAACTAGCTGAGAAGAGGCCTCGCGTGCGAGGACAATTTGTGAGGAATGGAGCAAATGTTGATCTCAACGGGCAACCTTCTTCAACTGGCAATGACAACGACGACGACGAAACGCTCTAA 3132 43.71 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRSGVQLKLLNVVLLIIPSFLRAFFFFFFFFFFFNFMDSMMEDRSEIAFFDVETTVPSRQGQGFTILEFGAILVCPRKLVELESYSTLVRPSHLSLISSLSVRCNGITRDAVLSSPTFAQIAHKVYHILHGRIWAGHNILRFDCARIREAFAQIGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPENNLVPPNAVTRRRAGISSRHRVGSNKSTHSSSSRISLTDEQGEAHPILSLVTCSSEDGTSNLAESDATESDSFNMNSFSDQITGESLGTDISMEEEHVSVSPEFLEPDQVSIPSITASFIPFFRGSQRIQLLHNDACLLLLCNNLKVRFGISTKFTDYAGRPRLSFVVDVPPSLCRVLEASDGVAQRLFSDSGSGSEWRPVVFVMDIKPLPPQYSKRSKWRYSHLCYRDVEKGTISCFDKHSYSVLNWRCGSFERVVTMECKEINSNKDCGVGESNRGGGGAGFVDRSKVKILLCDNDSKSSQEVFTLLLRCSYQGMASFHCFRHVKFVFTVISVRSARQVINALNAEGPDIDIILTEVDLPMAKGMKMLKYVTRDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHIWRRRRMLGLTEKQILNFDFDLATSDLSDRNTNSTTFLSDDTDDNTHRSINPELDMPHQEDMSAVADATAMDPPAADSLQFQPNVHFIDENHNGPKKCKLKIGKIRESSAFFTYCKPNALKSNFQAPPAQQLRREENPLSSETDQLVSTDHCETGNACTSYSQGDGCRSSISVPDSWSMEMSSSPQTFQFSQPMSHDEEKLQFSQQMSHDEEKLSQVVEHPRDESRPAGLLTQTKYPFYLPGGTNQVLIPPSTDFYHCKNQHDGQNHVTAAAMPQYSHFHHFPLASGMPPFPYYPLNICLQPSQMPSSHPWPPSFGNSSSTEVKLSKADIREAALIKFRQKRKERCFDKKIRYENRKQLAEKRPRVRGQFVRNGANVDLNGQPSSTGNDNDDDETL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 701417 711320 - CmaCh11G001310.1 Cma11g00131 302640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00131 1043 Pfam Response regulator receiver domain 555 643 IPR001789 GO:0000160
Cma11g00131 1043 SUPERFAMILY Ribonuclease H-like 83 214 IPR012337 -
Cma11g00131 1043 MobiDBLite consensus disorder prediction 236 263 - -
Cma11g00131 1043 Pfam CCT motif 978 1020 IPR010402 GO:0005515
Cma11g00131 1043 SMART REC_2 514 645 IPR001789 GO:0000160
Cma11g00131 1043 MobiDBLite consensus disorder prediction 280 299 - -
Cma11g00131 1043 ProSiteProfiles Response regulatory domain profile. 515 649 IPR001789 GO:0000160
Cma11g00131 1043 ProSiteProfiles CCT domain profile. 978 1020 IPR010402 GO:0005515
Cma11g00131 1043 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 485 1025 - -
Cma11g00131 1043 MobiDBLite consensus disorder prediction 1004 1043 - -
Cma11g00131 1043 SUPERFAMILY CheY-like 513 654 IPR011006 -
Cma11g00131 1043 MobiDBLite consensus disorder prediction 244 263 - -
Cma11g00131 1043 PANTHER TWO-COMPONENT RESPONSE REGULATOR 485 1025 IPR045279 GO:0009736
Cma11g00131 1043 SMART exoiiiendus 83 218 IPR013520 -
Cma11g00131 1043 Gene3D - 514 738 - -
Cma11g00131 1043 MobiDBLite consensus disorder prediction 681 701 - -
Cma11g00131 1043 CDD DEDDh 85 210 - -
Cma11g00131 1043 MobiDBLite consensus disorder prediction 1022 1037 - -
Cma11g00131 1043 Gene3D - 76 196 IPR036397 GO:0003676
Cma11g00131 1043 Pfam Exonuclease 86 212 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00131 K12127 TOC1, APRR1; pseudo-response regulator 1 - tcc:18604747 607.446
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00204 Cma11g00131 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00131 Cma-Chr11:701417 Cma02g01147 Cma-Chr2:6760695 2.03E-14 dispersed
Cma19g00483 Cma-Chr19:5772608 Cma11g00131 Cma-Chr11:701417 1.06E-10 dispersed
Cma01g00801 Cma-Chr1:4313087 Cma11g00131 Cma-Chr11:701417 0 wgd
Cma10g00204 Cma-Chr10:906965 Cma11g00131 Cma-Chr11:701417 1.39E-168 wgd
Cma11g00131 Cma-Chr11:701417 Cma13g01146 Cma-Chr13:8431403 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g581 . . Bda06g00537 . . . . . . . Cma10g00204 Cma11g00131 Car10g00193 Car11g00165 Sed08g0233 . Cpe04g01486 Bhi02g00300 Tan09g2098 Cmetu02g0126 . Hepe09g0103 . . Cla06g01577 Cam06g1745 Cec06g1803 Cco06g1805 Clacu06g1711 Cmu06g1655 Cre06g2468 . . . . . . . . . Blo15g00320 . . . . . . . Cmo10g00221 Cmo11g00181 . . . . . Cpe18g00783 . . . . . . . . . . . . . . Lsi06g01450 Csa01g00252 Chy02g02482 Cme02g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35777 PF00929 RNase_T 4.00E-13 CL0219 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00131 Cma_Chr11 FPKM 7.188742 7.756277 7.470111 8.128247 6.456709 6.825238 8.445695 7.441907 7.546696 7.574847