Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00138 ATGCGTATAAAATCAAAAGCCTTGGGCTTCATTGAAATACTCTATGGTTGTGTTTCAGTAACAATCTCACAGTTCCTTCCCAGTAGAACAGAGAACAAAATGCATTTTCACAAACAGGTTGTGGATCATTTGAAGAGGAAAATGGCGTTTCTTGGACCTCTCTTGGTGGGTCTTCTACTCTCTTTGGGATGTGATTCTGTTCATGCCAACAATGGAGGTTGGACTGATGCCCACGCTACGTTCTACGGTGGGGGCGACGCTGCTGGCACAATGGGAGGAGCTTGTGGCTATGGGAACCTGTACAGCCAAGGGTATGGAACGAACACAGCGGCATTAAGCACAGCCCTGTTCAACAATGGGCTGAGCTGTGGAGCTTGCTTCGAAATCAAGTGCGTAAATGATCCAAAATGGTGTCTTCCAAACTCCATTGTGGTGACTGCCACAAACTTCTGCCCACCAAACAATGCACTCCCCAACAACGCCGGCGGCTGGTGCAATCCTCCCCAGCACCATTTCGACCTCTCCCAGCCCGTCTTCCAGCAAATCGCTCAATTCAAAGCAGGCGTCGTCCCAGTGGCTTACAGAAGGGTGTCTTGTCAGAAGAAAGGAGGCATAAGATTCACAATAAACGGGCATTCGTACTTCAATTTAGTTCTTGTAACGAACGTTGGTGGAGGTGGGGATGTTCATGGGGTATGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGGCAGAACTGGCAGAGCAATTCATATCTGAATGGACAAAGCCTGTCGTTCAAAGTGATCACCGGCGATGGCCGGACGGTGATATCCAATAGCGTAGCACCAGCTGGGTGGAGCTTTGGTCAGACTTATAGTGGGCTTCAGTTCCCATGA 894 49.44 MRIKSKALGFIEILYGCVSVTISQFLPSRTENKMHFHKQVVDHLKRKMAFLGPLLVGLLLSLGCDSVHANNGGWTDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAQFKAGVVPVAYRRVSCQKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVITGDGRTVISNSVAPAGWSFGQTYSGLQFP 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 744009 749261 + CmaCh11G001380.1 Cma11g00138 302647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00138 297 Gene3D - 60 200 IPR036908 -
Cma11g00138 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Cma11g00138 297 PANTHER EXPANSIN 53 296 - -
Cma11g00138 297 PRINTS Expansin signature 179 192 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 143 153 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 250 271 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 131 142 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 162 179 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 279 295 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 104 118 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Cma11g00138 297 PRINTS Expansin signature 203 215 IPR002963 GO:0009664
Cma11g00138 297 SUPERFAMILY Barwin-like endoglucanases 73 222 IPR036908 -
Cma11g00138 297 SMART dpbb_1 109 194 IPR007112 -
Cma11g00138 297 PANTHER EXPANSIN-A15 53 296 IPR002963 GO:0009664
Cma11g00138 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 204 IPR007112 -
Cma11g00138 297 Pfam Lytic transglycolase 109 194 IPR009009 -
Cma11g00138 297 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Cma11g00138 297 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576
Cma11g00138 297 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576
Cma11g00138 297 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576
Cma11g00138 297 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Cma11g00138 297 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Cma11g00138 297 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Cma11g00138 297 SUPERFAMILY PHL pollen allergen 201 292 IPR036749 -
Cma11g00138 297 Gene3D - 202 296 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00197 Cma11g00138 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00138 Cma-Chr11:744009 Cma15g00264 Cma-Chr15:1261381 1.78E-135 dispersed
Cma18g01138 Cma-Chr18:9207304 Cma11g00138 Cma-Chr11:744009 5.28E-70 dispersed
Cma01g00793 Cma-Chr1:4282436 Cma11g00138 Cma-Chr11:744009 1.52E-110 wgd
Cma10g00197 Cma-Chr10:888640 Cma11g00138 Cma-Chr11:744009 8.01E-156 wgd
Cma11g00138 Cma-Chr11:744009 Cma04g01668 Cma-Chr4:8389926 1.64E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00138 - K20628 csv:101222936 457.218