Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00139 ATGGCCACCGTCACCACTCAAGCTTCCGCCGCCGTTTTACGGCCATTCGCCTCCCGATCGAGGTTCCTTACTGGGTCTTTCGGTAAACTCCACCGTGAGCTGTCGGTTAAACCGGTGGCTGCTTCATCGCCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTGCAGGCGACAACGGATTCGACCCACTGGGTTTAGCGGAGGACCCAGAGAATCTGAGGTGGTTCGTGCAAGCGGAGCTCGTGAACGGGCGGTGGGCGATGCTGGGTGTGGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCACCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCGTCATCTTCAACTCTGTTCGTGATCGAGTTCATCCTGTTCCATTACGTCGAAATCCGGAGATGGCAGGACATTAAAAACCCAGGAAGCGTGAACCAAGATCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGGTACCCTGGTGGTATTTTCAACCCCCTGAACTTCGCTCCCACTCTTGAAGCCAAAGAGAAGGAAATCGCCAATGGGAGGCTTGCAATGTTGGCGTTTTTGGGGTTCATCGTGCAACATAATGTGACCGGAAAGGGGCCATTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTCCAGACATTCAGTGGCAACTAA 759 52.57 MATVTTQASAAVLRPFASRSRFLTGSFGKLHRELSVKPVAASSPSSFKVEAKKGEWLPGLPSPAYLNGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFSGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 750299 751773 + CmaCh11G001390.1 Cma11g00139 302648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00139 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Cma11g00139 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Cma11g00139 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
Cma11g00139 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Cma11g00139 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02584 Cma-Chr4:17715041 Cma11g00139 Cma-Chr11:750299 6.40E-49 dispersed
Cma10g00197 Cma-Chr10:888640 Cma11g00139 Cma-Chr11:750299 2.25E-140 dispersed
Cma11g00139 Cma-Chr11:750299 Cma18g00694 Cma-Chr18:6352027 1.48E-75 dispersed
Cma11g00139 Cma-Chr11:750299 Cma01g00793 Cma-Chr1:4282436 6.68E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00139 K08910 - csv:101222701 473.011