Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00140 ATGAGGTCGAGCAAAGAATCGAAGAAGAAAACTCGCCCCTCATCACCTCTCAGGGACCGAACCAGTCCTTCAACGAGGTTCGAATCGAGACGTCATGGGTCTAACTCATCGAGGCTCAGCCCCTCTACTTCCCTTCTGGACCGTGACCTTGTCACCAGCGAAGCCAATCTCCTCGGAGACCTAAAACTCTCTCCCGACGACTCAGTTTCAGACTACAATCCCCGGAGCTTTCCTTACAGTGTGAAGCAGCAATGTTGGGATAAGGCCGAGAAGATTAAAGGAAGGGACCCAGATCGGTGGCGCCGAGATGCTCTTGGTAACACTGTTTTCCGAAAGCTTGTTGGCTGCCCCGGTTGTCTTTGTCATGACTATGATCATATTTTGCCTTACTCTAAGGGAGGAAAAAGCACACTGGAAAATTGTCAGGTTTTGCAGGCAACTGTTAATCGATCCAAGGGAAACCGTACTGAACTTTCAAGAGCAGAACTAATTCAGAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGACCTTCTTGAACTGTCTGCCTATGGCAATGTACATCGTGGACAAGACTCAGGAGGGTGCAGAATTCAGTGA 603 49.25 MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 752212 756501 + CmaCh11G001400.1 Cma11g00140 302649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00140 200 Gene3D - 81 175 - -
Cma11g00140 200 PANTHER HNH ENDONUCLEASE 5 200 - -
Cma11g00140 200 PANTHER HNH ENDONUCLEASE 5 200 - -
Cma11g00140 200 MobiDBLite consensus disorder prediction 1 16 - -
Cma11g00140 200 CDD HNHc 109 153 IPR003615 -
Cma11g00140 200 Pfam HNH endonuclease 122 155 IPR002711 GO:0003676|GO:0004519
Cma11g00140 200 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00140 - - - csv:101222461 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00122 Cma-Chr11:651235 Cma11g00140 Cma-Chr11:752212 4.39E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g563 . . . Bda15g00607 Bpe12g00542 . . . . . . Cma11g00140 . Car11g00155 . . Cpe04g01496 . . . . . . . Cla06g01587 Cam06g1756 Cec06g1812 Cco06g1815 Clacu06g1722 Cmu06g1665 Cre06g2479 . . . . . . . . Blo13g00005 . . . . . . Bma08g00225 . . Cmo11g00171 . . . . . . . . . . . . . . . . . . . . . Csa01g00240 Chy02g02492 Cme02g01878
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005290 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00140 Cma_Chr11 FPKM 6.496284 5.320267 11.298749 9.926147 22.104052 16.844328 19.772814 14.582307 13.502512 14.57306