Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00141 | ATGATGGAAATTAAGGACTCTGCCATTAGAATTTTCGGCAAGAAGATTCCGCTTCCGGCCGACTCTGAAGCTCCGTTGATGGAAAGCGATGATTCGGATTCAAGCTCCGAGAAAGAAAATCGAGACGGAGCAGTAGAAAAGGTCTCAATCAACTGCGAGTTCTGCGGATGCAGTTGTAGGCAACTTCGGAAACAAGATGCAGTTGTAGGAAAAGCCACCGAGAGTTCAGCTGCAAAAGAGGAAACTCTTCATGATTCAGAGGATTATGCATGTGTAAAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAACAGATGAAAATGATAAGCTCGCAACAAGGAAAACTGAGAAAGAACAGAATGATGCCCCCAACTCGAAAGAGAAACTGAAGAAACCAGATAAGATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTATAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATCAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAAAACAAGAACTCAGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTCCGAGCTGCACAAATTGATGTTCCTATTGAGGTCAACCACCTAGCATCAAAAGGCAATGGACGAGTCCTCAATTTCAGTGTAAGCCCACCTGTATGTGAATCTATGGTCAATGTATCACATCCTGCAGAAAGAAAGGTCTTGAATGGAACAAGGAATGAATTTGAGGGAGCCAAAGGACCTTGTGAGGGTGGGGAAACTGGTGATGATTGTTCTAGTGCATCTTCAGTAACAATGTCAAGCTCAATGAAGAATGGAGCCAGGAGGTTCCCTCAAGAACCACATATGCAGAACATCAATGGTTTTCCTTCTCAAATCCCATGTCTTCCTGGTGTTCCTTGGCCTTGTTCATGGACTGCACCAATACCTCCACCAGCCTTGTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGTTGCAGTGCTTCAGGTTCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAATCCCTGGTCCAAATTCTCCGACGCTAGGCAAGCATTCGAGAGATGGCGATGAACTCCAGGCTGATAATTCTGAGATGAAAGATCCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCAAACGAAGCTGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAATGTTTTCCAATCAAAGGGCGACCTAAAGAGTAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCCAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCACGAGCGGTCGTGA | 1440 | 44.31 | MMEIKDSAIRIFGKKIPLPADSEAPLMESDDSDSSSEKENRDGAVEKVSINCEFCGCSCRQLRKQDAVVGKATESSAAKEETLHDSEDYACVKTANEAHMNPEVLSTDENDKLATRKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNKNSASHYRHITISEALRAAQIDVPIEVNHLASKGNGRVLNFSVSPPVCESMVNVSHPAERKVLNGTRNEFEGAKGPCEGGETGDDCSSASSVTMSSSMKNGARRFPQEPHMQNINGFPSQIPCLPGVPWPCSWTAPIPPPALCPPGVPLSFYPATYWSCSASGSWNIPWFTPQPCPPIPGPNSPTLGKHSRDGDELQADNSEMKDPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSNVFQSKGDLKSNVSEVLSPVLQANPAALSRSLTFHERS | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 757756 | 760782 | - | CmaCh11G001410.1 | Cma11g00141 | 302650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00141 | 479 | Pfam | Dof domain, zinc finger | 136 | 193 | IPR003851 | GO:0003677|GO:0006355 | |
Cma11g00141 | 479 | MobiDBLite | consensus disorder prediction | 379 | 397 | - | - | |
Cma11g00141 | 479 | ProSiteProfiles | Zinc finger Dof-type profile. | 139 | 193 | IPR003851 | GO:0003677|GO:0006355 | |
Cma11g00141 | 479 | MobiDBLite | consensus disorder prediction | 19 | 43 | - | - | |
Cma11g00141 | 479 | MobiDBLite | consensus disorder prediction | 367 | 407 | - | - | |
Cma11g00141 | 479 | MobiDBLite | consensus disorder prediction | 104 | 132 | - | - | |
Cma11g00141 | 479 | MobiDBLite | consensus disorder prediction | 264 | 284 | - | - | |
Cma11g00141 | 479 | ProSitePatterns | Zinc finger Dof-type signature. | 141 | 177 | IPR003851 | GO:0003677|GO:0006355 | |
Cma11g00141 | 479 | PANTHER | CYCLIC DOF FACTOR 1 | 1 | 478 | - | - | |
Cma11g00141 | 479 | MobiDBLite | consensus disorder prediction | 100 | 132 | - | - | |
Cma11g00141 | 479 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 478 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00141 | Cma13g01138 | CCT | |
Cma11g00141 | Cma13g01138 | ECH | |
Cma10g00196 | Cma11g00141 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00906 | Cma-Chr6:5905152 | Cma11g00141 | Cma-Chr11:757756 | 2.85E-59 | dispersed | |
Cma11g00141 | Cma-Chr11:757756 | Cma11g01017 | Cma-Chr11:5512350 | 7.90E-116 | dispersed | |
Cma01g00791 | Cma-Chr1:4266501 | Cma11g00141 | Cma-Chr11:757756 | 1.82E-123 | wgd | |
Cma10g00196 | Cma-Chr10:882611 | Cma11g00141 | Cma-Chr11:757756 | 0 | wgd | |
Cma11g00141 | Cma-Chr11:757756 | Cma13g01138 | Cma-Chr13:8406675 | 1.33E-106 | wgd | |
Cma11g00141 | Cma-Chr11:757756 | Cma04g01665 | Cma-Chr4:8375928 | 1.25E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35779 | PF02701 | zf-Dof | 1.90E-32 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00141 | - | - | cmax:111471198 | 923.309 |