Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00141 ATGATGGAAATTAAGGACTCTGCCATTAGAATTTTCGGCAAGAAGATTCCGCTTCCGGCCGACTCTGAAGCTCCGTTGATGGAAAGCGATGATTCGGATTCAAGCTCCGAGAAAGAAAATCGAGACGGAGCAGTAGAAAAGGTCTCAATCAACTGCGAGTTCTGCGGATGCAGTTGTAGGCAACTTCGGAAACAAGATGCAGTTGTAGGAAAAGCCACCGAGAGTTCAGCTGCAAAAGAGGAAACTCTTCATGATTCAGAGGATTATGCATGTGTAAAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAACAGATGAAAATGATAAGCTCGCAACAAGGAAAACTGAGAAAGAACAGAATGATGCCCCCAACTCGAAAGAGAAACTGAAGAAACCAGATAAGATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTATAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATCAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAAAACAAGAACTCAGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTCCGAGCTGCACAAATTGATGTTCCTATTGAGGTCAACCACCTAGCATCAAAAGGCAATGGACGAGTCCTCAATTTCAGTGTAAGCCCACCTGTATGTGAATCTATGGTCAATGTATCACATCCTGCAGAAAGAAAGGTCTTGAATGGAACAAGGAATGAATTTGAGGGAGCCAAAGGACCTTGTGAGGGTGGGGAAACTGGTGATGATTGTTCTAGTGCATCTTCAGTAACAATGTCAAGCTCAATGAAGAATGGAGCCAGGAGGTTCCCTCAAGAACCACATATGCAGAACATCAATGGTTTTCCTTCTCAAATCCCATGTCTTCCTGGTGTTCCTTGGCCTTGTTCATGGACTGCACCAATACCTCCACCAGCCTTGTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGTTGCAGTGCTTCAGGTTCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAATCCCTGGTCCAAATTCTCCGACGCTAGGCAAGCATTCGAGAGATGGCGATGAACTCCAGGCTGATAATTCTGAGATGAAAGATCCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCAAACGAAGCTGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAATGTTTTCCAATCAAAGGGCGACCTAAAGAGTAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCCAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCACGAGCGGTCGTGA 1440 44.31 MMEIKDSAIRIFGKKIPLPADSEAPLMESDDSDSSSEKENRDGAVEKVSINCEFCGCSCRQLRKQDAVVGKATESSAAKEETLHDSEDYACVKTANEAHMNPEVLSTDENDKLATRKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNKNSASHYRHITISEALRAAQIDVPIEVNHLASKGNGRVLNFSVSPPVCESMVNVSHPAERKVLNGTRNEFEGAKGPCEGGETGDDCSSASSVTMSSSMKNGARRFPQEPHMQNINGFPSQIPCLPGVPWPCSWTAPIPPPALCPPGVPLSFYPATYWSCSASGSWNIPWFTPQPCPPIPGPNSPTLGKHSRDGDELQADNSEMKDPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSNVFQSKGDLKSNVSEVLSPVLQANPAALSRSLTFHERS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 757756 760782 - CmaCh11G001410.1 Cma11g00141 302650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00141 479 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Cma11g00141 479 MobiDBLite consensus disorder prediction 379 397 - -
Cma11g00141 479 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Cma11g00141 479 MobiDBLite consensus disorder prediction 19 43 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 367 407 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 104 132 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 264 284 - -
Cma11g00141 479 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Cma11g00141 479 PANTHER CYCLIC DOF FACTOR 1 1 478 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 100 132 - -
Cma11g00141 479 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00141 Cma13g01138 CCT
Cma11g00141 Cma13g01138 ECH
Cma10g00196 Cma11g00141 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00906 Cma-Chr6:5905152 Cma11g00141 Cma-Chr11:757756 2.85E-59 dispersed
Cma11g00141 Cma-Chr11:757756 Cma11g01017 Cma-Chr11:5512350 7.90E-116 dispersed
Cma01g00791 Cma-Chr1:4266501 Cma11g00141 Cma-Chr11:757756 1.82E-123 wgd
Cma10g00196 Cma-Chr10:882611 Cma11g00141 Cma-Chr11:757756 0 wgd
Cma11g00141 Cma-Chr11:757756 Cma13g01138 Cma-Chr13:8406675 1.33E-106 wgd
Cma11g00141 Cma-Chr11:757756 Cma04g01665 Cma-Chr4:8375928 1.25E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35779 PF02701 zf-Dof 1.90E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00141 - - cmax:111471198 923.309