Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00141 ATGATGGAAATTAAGGACTCTGCCATTAGAATTTTCGGCAAGAAGATTCCGCTTCCGGCCGACTCTGAAGCTCCGTTGATGGAAAGCGATGATTCGGATTCAAGCTCCGAGAAAGAAAATCGAGACGGAGCAGTAGAAAAGGTCTCAATCAACTGCGAGTTCTGCGGATGCAGTTGTAGGCAACTTCGGAAACAAGATGCAGTTGTAGGAAAAGCCACCGAGAGTTCAGCTGCAAAAGAGGAAACTCTTCATGATTCAGAGGATTATGCATGTGTAAAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAACAGATGAAAATGATAAGCTCGCAACAAGGAAAACTGAGAAAGAACAGAATGATGCCCCCAACTCGAAAGAGAAACTGAAGAAACCAGATAAGATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTATAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATCAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAAAACAAGAACTCAGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTCCGAGCTGCACAAATTGATGTTCCTATTGAGGTCAACCACCTAGCATCAAAAGGCAATGGACGAGTCCTCAATTTCAGTGTAAGCCCACCTGTATGTGAATCTATGGTCAATGTATCACATCCTGCAGAAAGAAAGGTCTTGAATGGAACAAGGAATGAATTTGAGGGAGCCAAAGGACCTTGTGAGGGTGGGGAAACTGGTGATGATTGTTCTAGTGCATCTTCAGTAACAATGTCAAGCTCAATGAAGAATGGAGCCAGGAGGTTCCCTCAAGAACCACATATGCAGAACATCAATGGTTTTCCTTCTCAAATCCCATGTCTTCCTGGTGTTCCTTGGCCTTGTTCATGGACTGCACCAATACCTCCACCAGCCTTGTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGTTGCAGTGCTTCAGGTTCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAATCCCTGGTCCAAATTCTCCGACGCTAGGCAAGCATTCGAGAGATGGCGATGAACTCCAGGCTGATAATTCTGAGATGAAAGATCCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCAAACGAAGCTGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGATCTGTCTAATGTTTTCCAATCAAAGGGCGACCTAAAGAGTAACGTTTCTGAAGTGTTGTCTCCAGTTTTGCAAGCCAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCACGAGCGGTCGTGA 1440 44.31 MMEIKDSAIRIFGKKIPLPADSEAPLMESDDSDSSSEKENRDGAVEKVSINCEFCGCSCRQLRKQDAVVGKATESSAAKEETLHDSEDYACVKTANEAHMNPEVLSTDENDKLATRKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTIRNVPVGAGRRKNKNSASHYRHITISEALRAAQIDVPIEVNHLASKGNGRVLNFSVSPPVCESMVNVSHPAERKVLNGTRNEFEGAKGPCEGGETGDDCSSASSVTMSSSMKNGARRFPQEPHMQNINGFPSQIPCLPGVPWPCSWTAPIPPPALCPPGVPLSFYPATYWSCSASGSWNIPWFTPQPCPPIPGPNSPTLGKHSRDGDELQADNSEMKDPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSNVFQSKGDLKSNVSEVLSPVLQANPAALSRSLTFHERS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 757756 760782 - CmaCh11G001410.1 Cma11g00141 302650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00141 479 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Cma11g00141 479 MobiDBLite consensus disorder prediction 379 397 - -
Cma11g00141 479 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Cma11g00141 479 MobiDBLite consensus disorder prediction 19 43 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 367 407 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 104 132 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 264 284 - -
Cma11g00141 479 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Cma11g00141 479 PANTHER CYCLIC DOF FACTOR 1 1 478 - -
Cma11g00141 479 MobiDBLite consensus disorder prediction 100 132 - -
Cma11g00141 479 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00141 - - - cmax:111471198 923.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00141 Cma13g01138 CCT
Cma11g00141 Cma13g01138 ECH
Cma10g00196 Cma11g00141 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00906 Cma-Chr6:5905152 Cma11g00141 Cma-Chr11:757756 2.85E-59 dispersed
Cma11g00141 Cma-Chr11:757756 Cma11g01017 Cma-Chr11:5512350 7.90E-116 dispersed
Cma01g00791 Cma-Chr1:4266501 Cma11g00141 Cma-Chr11:757756 1.82E-123 wgd
Cma10g00196 Cma-Chr10:882611 Cma11g00141 Cma-Chr11:757756 0 wgd
Cma11g00141 Cma-Chr11:757756 Cma13g01138 Cma-Chr13:8406675 1.33E-106 wgd
Cma11g00141 Cma-Chr11:757756 Cma04g01665 Cma-Chr4:8375928 1.25E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35779 PF02701 zf-Dof 1.90E-32 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00141 Cma_Chr11 FPKM 3.767291 4.048044 4.359773 4.52734 2.503412 2.155098 2.19808 13.610051 12.364497 12.871053