Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00142 ATGGCCTCCGTCGCCCTCAAATCCTTCATTGGCCTCCGCCAATCTACGCCGGAGAAGCCCCATTTCGTCACCCAAACTAAGACCAACCCGAACCCCAAATCTCTGCGCCGGTTTTATGTCGCCGCTGCCAAAACTAGCCCTAAAATCAACGGACGCAACCTCAGAGTCGCGGTGGTGGGCGGTGGCCCTGCCGGAGGATCGGCCGCCGAGACTCTCGCCAAGGGAGGCGTGGAGACTTTTCTGTTTGAGAGGAAGCTTGACAACTGCAAGCCATGCGGTGGTGCGATTCCCCTGTGTATGGTTGGCGAGTTCGATCTCCCGTTGGACCTGATTGATCGCCGTGTCACGAAGATGAAGATGATTTCTCCGTCGAACGTTGCAGTCGACATCGGCCAAACCCTAAAACCTCACGAGTACATTGGGATGGTTCGTCGTGAGGTTCTGGATGCGTATCTTCGCAATCGAGCTGCTGAGAATGGGGCTAATGTGATTAATGGCTTGGTCATGAAATTGGAGCTCCCGAAGGAACGAAATGCACCGTATGTCCTTCATTACACTTCTTACGACGGGAAGAAAAGTGGTGTCGGAGAGAAGAAGACATTGGAGGTGGACGCCGTGATCGGTGCCGACGGAGCCAATTCTCGCGTCGCCAAGGCCATTGACGCCGGCGATTACGACTACGCCATCGCATTCCAGGAGAGAATCAAGATCCCGGATGACAAAATGGTGTACTACGAGAATCTTGCAGAGATGTACGTAGGTGACGACGTATCGCCGGATTTCTACGGTTGGGTGTTCCCGAAATGCGACCACGTGGCGGTCGGCACCGGCACAGTGACTCACAAAGCCGACATCAAGAAGTTTCAAATAGCCACACGAAACAGAGCGAAGGACAAGATCTTAGGCGGCAAGATCATCCGAGTTGAAGCACATCCAATCCCAGAACACCCTCGTCCACGGCGGTTGGCTGGGAGAGTGGCACTGGTGGGCGATGCAGCTGGGTATGTGACGAAATGCTCAGGCGAGGGCATATACTTCGCAGCAAAGAGCGGGCGAATGTGCGCGGAGGCCATCGTGGAGGGGTCGGAGAATGGGAAGAGAATGGTGGAGGAATCGGACCTGAGGAAGTACTTGGAGAAGTGGGATAAAACTTACTGGCCGACGTACAAGGTTCTGGACGTGTTGCAGAAGGTGTTTTACAGGTCGAATCCGGCGAGGGAAGCTTTTGTGGAGATGTGCGCGGATGAGTATGTGCAGAAGATGACATTCGACAGCTACTTATACAAGAAAGTGGTGCCTGGGAATCCATTGGAGGACTTGAAATTGGCTGTCAATACAATTGGAAGCTTGGTGAGAGCCAATGCTCTGAGGAGGGAGATGGACAAAGTTACCTTTTCTTTTTCTGGATTTCAAGAGTCAGATATGGCAGCAACTTCCGCAACTATTTTGTCTATTGGAACAAATGCATCACTTAATACTAAACTCAACTCATTTTCCCAGTCAAAGTCTGCTAGCTTAAGGATCAATTCACAAGAGACTTTTAAGAGCTTCTGTGGCCTCAAGGCTGCTTCATCTCTTGGTTGTGAATCGGAGTCATCTTTCCTAGGGAAACAGAGCAGTGCCGCTTTATGGCGTCGTCACGCTACCTCATCTCAAAATGCGAACCAGAATGTATACAAAAAACTTCAACCTCAAGCGTCTTACAAGGTTGCTGTTCTTGGCGCTGCTGGAGGGATAGGTCAACCTTTGTCGCTTCTCATCAAGATGTCTCCATTAGTTTCCACCTTGAACCTCTATGATATTGCTAATGTCAAGGGTGTTGCTGCTGACATTAGCCACTGCAACACTCCCTCAAAAGTTCAGGATTTCACAGGACCTTCTGAATTAGGCAATGCCTTGAAAGGTGTAGATGTTGTTGTCATACCTGCTGGGGTTCCAAGAAAGCCCGGTATGACTCGTGATGACCTATTCAATATTAATGCTGGCATAGTTAAGAGTTTGGTCGAGGCTGTTGCTGATAACTGTCCTGATGCCTTCATTCATATCATCAGCAACCCTGTGAACTCCACTGTGCCAATAGCAGCTGAAGTTCTGAAGAAGAAGGGCGTGTATGATTCAAAGAAACTTTTTGGAGTGACTACATTGGATGTTGTCCGGGCAAACACTTTTGTTGCTGAAAGAAAGAACCTTAAGCTGATTGACGTTGACGTCCCAGTCATTGGTGGACATGCGGGTATAACAATACTTCCCTTGCTGTCAAAGACAAGACCTTCAGCGAGCTTTACAGACGAAGAAATTCAGGAACTAACTGTTAGAATTCAAAATGCGGGAACTGAAGTCGTGGAAGCGAAGGCAGGAGCTGGATCGGCTACCCTTTCAATGGCATACGCTGCAGCAAGATTTGTCGAATCATCTCTTCGTGCTTTGGATGGAGACGGCGATGTATATGAGTGCTCTTTCGTGCAGTCTGATCTAACCGATCTTCCCTTCTTTGCATCGAGGGTTAAGCTAGGGAGGCAAGGAATTGAAGGCTTTGTAAAATCTGAGCTTCAGGGATTGTCTGAGTACGAGCAGAAGGCTCTTGAAGCTCTAAAGACAGAACTGAAGGCGAGCATTGAGAAGGGCATTGGTTTTGCTCAGAAGGAAGCTGTGGCGGCTTAA 2661 49.46 MASVALKSFIGLRQSTPEKPHFVTQTKTNPNPKSLRRFYVAAAKTSPKINGRNLRVAVVGGGPAGGSAAETLAKGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRNRAAENGANVINGLVMKLELPKERNAPYVLHYTSYDGKKSGVGEKKTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKVTFSFSGFQESDMAATSATILSIGTNASLNTKLNSFSQSKSASLRINSQETFKSFCGLKAASSLGCESESSFLGKQSSAALWRRHATSSQNANQNVYKKLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELGNALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKKKGVYDSKKLFGVTTLDVVRANTFVAERKNLKLIDVDVPVIGGHAGITILPLLSKTRPSASFTDEEIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGRQGIEGFVKSELQGLSEYEQKALEALKTELKASIEKGIGFAQKEAVAA 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 761504 766838 + CmaCh11G001420.1 Cma11g00142 302651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00142 886 Pfam lactate/malate dehydrogenase, NAD binding domain 569 711 IPR001236 GO:0016491
Cma11g00142 886 PANTHER MALATE AND LACTATE DEHYDROGENASE 499 886 - -
Cma11g00142 886 SUPERFAMILY FAD/NAD(P)-binding domain 54 436 IPR036188 -
Cma11g00142 886 SUPERFAMILY LDH C-terminal domain-like 712 879 IPR015955 GO:0003824|GO:0016616
Cma11g00142 886 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 223 IPR023753 GO:0016491
Cma11g00142 886 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 560 711 IPR036291 -
Cma11g00142 886 TIGRFAM GG-red-SF: geranylgeranyl reductase family 56 358 IPR011777 GO:0016628
Cma11g00142 886 CDD MDH_glyoxysomal_mitochondrial 568 879 IPR010097 GO:0006099|GO:0030060
Cma11g00142 886 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Cma11g00142 886 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 - -
Cma11g00142 886 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 338 - -
Cma11g00142 886 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 713 878 IPR022383 GO:0016616
Cma11g00142 886 TIGRFAM BchP-ChlP: geranylgeranyl reductase 55 452 IPR010253 GO:0015979|GO:0015995|GO:0045550
Cma11g00142 886 Gene3D - 53 477 IPR036188 -
Cma11g00142 886 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 569 880 IPR010097 GO:0006099|GO:0030060
Cma11g00142 886 ProSitePatterns Malate dehydrogenase active site signature. 712 724 IPR001252 GO:0006108|GO:0016615
Cma11g00142 886 Gene3D - 566 712 - -
Cma11g00142 886 TIGRFAM ChlP: geranylgeranyl reductase 54 452 IPR011774 GO:0045550
Cma11g00142 886 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 499 886 - -
Cma11g00142 886 Gene3D - 713 884 IPR015955 GO:0003824|GO:0016616
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00142 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - csv:101221755 883.634
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00192 Cma11g00142 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00566 Cma-Chr4:2889458 Cma11g00142 Cma-Chr11:761504 7.26E-140 dispersed
Cma11g00142 Cma-Chr11:761504 Cma16g00418 Cma-Chr16:2090559 7.96E-136 dispersed
Cma15g01128 Cma-Chr15:7178372 Cma11g00142 Cma-Chr11:761504 3.67E-07 dispersed
Cma10g00194 Cma-Chr10:876448 Cma11g00142 Cma-Chr11:761504 0 transposed
Cma20g00015 Cma-Chr20:39282 Cma11g00142 Cma-Chr11:761504 0 transposed
Cma10g00192 Cma-Chr10:873816 Cma11g00142 Cma-Chr11:761504 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00142 Cma_Chr11 FPKM 20.207914 21.508247 63.528858 61.509693 149.027573 168.990585 144.53952 42.933498 44.072521 40.604515