Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00143 ATGATTTCACTGTTCATTACTCAAAATCCAAAACTGATCTCTTTCTTGCATGATTTCGTTATCTGTTCATGCGCTCTGATACTGGTTTTACGCTTCATTGGCTGCGCACCTTCTCCAATGCCTTCTCCCTTAAATTCTTTCCCTTTTCTTCTTCCCCTTCAATTTTCCAACTCTTTTGGTGAAGAGGAAATGGACCCTTTTCCTTCGTCATGCCATCTTTCCCCTCTCCATTTCAGGAGCTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCATTAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAATGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGTGCGGAGAAACGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACGCTAATCAAGAATGTGAAGGAGCTTGAGAAAGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGACCGGATTTACAGTTAGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACGAACAACTCCTCAGCCACCAGGGTTCTTCAGGATGATGAAGAAGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA 915 42.84 MISLFITQNPKLISFLHDFVICSCALILVLRFIGCAPSPMPSPLNSFPFLLPLQFSNSFGEEEMDPFPSSCHLSPLHFRSCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPINTIISEDGGENEKNGLERKEGRGKRKWCGETSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVLQDDEEEEEEDEEMKYLLADCSFSFTGGSLLLY 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 765229 768191 - CmaCh11G001430.1 Cma11g00143 302652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00143 304 MobiDBLite consensus disorder prediction 260 280 - -
Cma11g00143 304 Pfam RWP-RK domain 152 199 IPR003035 -
Cma11g00143 304 MobiDBLite consensus disorder prediction 119 148 - -
Cma11g00143 304 ProSiteProfiles RWP-RK domain profile. 131 219 IPR003035 -
Cma11g00143 304 PANTHER PROTEIN RKD1-RELATED 56 269 - -
Cma11g00143 304 MobiDBLite consensus disorder prediction 123 140 - -
Cma11g00143 304 PANTHER PROTEIN RKD4 56 269 IPR044607 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00191 Cma11g00143 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00624 Cma-Chr3:5422972 Cma11g00143 Cma-Chr11:765229 7.18E-25 dispersed
Cma11g00143 Cma-Chr11:765229 Cma12g00657 Cma-Chr12:3506288 7.43E-09 dispersed
Cma18g01327 Cma-Chr18:10140319 Cma11g00143 Cma-Chr11:765229 1.13E-31 transposed
Cma10g00190 Cma-Chr10:865735 Cma11g00143 Cma-Chr11:765229 3.01E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35780 PF02042 RWP-RK 3.50E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00143 - - cmax:111471365 573.163