Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00143 | ATGATTTCACTGTTCATTACTCAAAATCCAAAACTGATCTCTTTCTTGCATGATTTCGTTATCTGTTCATGCGCTCTGATACTGGTTTTACGCTTCATTGGCTGCGCACCTTCTCCAATGCCTTCTCCCTTAAATTCTTTCCCTTTTCTTCTTCCCCTTCAATTTTCCAACTCTTTTGGTGAAGAGGAAATGGACCCTTTTCCTTCGTCATGCCATCTTTCCCCTCTCCATTTCAGGAGCTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCATTAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAATGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGTGCGGAGAAACGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACGCTAATCAAGAATGTGAAGGAGCTTGAGAAAGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGACCGGATTTACAGTTAGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACGAACAACTCCTCAGCCACCAGGGTTCTTCAGGATGATGAAGAAGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA | 915 | 42.84 | MISLFITQNPKLISFLHDFVICSCALILVLRFIGCAPSPMPSPLNSFPFLLPLQFSNSFGEEEMDPFPSSCHLSPLHFRSCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPINTIISEDGGENEKNGLERKEGRGKRKWCGETSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVLQDDEEEEEEDEEMKYLLADCSFSFTGGSLLLY | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 765229 | 768191 | - | CmaCh11G001430.1 | Cma11g00143 | 302652 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00143 | 304 | MobiDBLite | consensus disorder prediction | 260 | 280 | - | - | |
Cma11g00143 | 304 | Pfam | RWP-RK domain | 152 | 199 | IPR003035 | - | |
Cma11g00143 | 304 | MobiDBLite | consensus disorder prediction | 119 | 148 | - | - | |
Cma11g00143 | 304 | ProSiteProfiles | RWP-RK domain profile. | 131 | 219 | IPR003035 | - | |
Cma11g00143 | 304 | PANTHER | PROTEIN RKD1-RELATED | 56 | 269 | - | - | |
Cma11g00143 | 304 | MobiDBLite | consensus disorder prediction | 123 | 140 | - | - | |
Cma11g00143 | 304 | PANTHER | PROTEIN RKD4 | 56 | 269 | IPR044607 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00191 | Cma11g00143 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00624 | Cma-Chr3:5422972 | Cma11g00143 | Cma-Chr11:765229 | 7.18E-25 | dispersed | |
Cma11g00143 | Cma-Chr11:765229 | Cma12g00657 | Cma-Chr12:3506288 | 7.43E-09 | dispersed | |
Cma18g01327 | Cma-Chr18:10140319 | Cma11g00143 | Cma-Chr11:765229 | 1.13E-31 | transposed | |
Cma10g00190 | Cma-Chr10:865735 | Cma11g00143 | Cma-Chr11:765229 | 3.01E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35780 | PF02042 | RWP-RK | 3.50E-20 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00143 | - | - | cmax:111471365 | 573.163 |