Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00143 ATGATTTCACTGTTCATTACTCAAAATCCAAAACTGATCTCTTTCTTGCATGATTTCGTTATCTGTTCATGCGCTCTGATACTGGTTTTACGCTTCATTGGCTGCGCACCTTCTCCAATGCCTTCTCCCTTAAATTCTTTCCCTTTTCTTCTTCCCCTTCAATTTTCCAACTCTTTTGGTGAAGAGGAAATGGACCCTTTTCCTTCGTCATGCCATCTTTCCCCTCTCCATTTCAGGAGCTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCATTAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAATGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGTGCGGAGAAACGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACGCTAATCAAGAATGTGAAGGAGCTTGAGAAAGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGACCGGATTTACAGTTAGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACGAACAACTCCTCAGCCACCAGGGTTCTTCAGGATGATGAAGAAGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA 915 42.84 MISLFITQNPKLISFLHDFVICSCALILVLRFIGCAPSPMPSPLNSFPFLLPLQFSNSFGEEEMDPFPSSCHLSPLHFRSCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPINTIISEDGGENEKNGLERKEGRGKRKWCGETSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVLQDDEEEEEEDEEMKYLLADCSFSFTGGSLLLY 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 765229 768191 - CmaCh11G001430.1 Cma11g00143 302652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00143 304 MobiDBLite consensus disorder prediction 260 280 - -
Cma11g00143 304 Pfam RWP-RK domain 152 199 IPR003035 -
Cma11g00143 304 MobiDBLite consensus disorder prediction 119 148 - -
Cma11g00143 304 ProSiteProfiles RWP-RK domain profile. 131 219 IPR003035 -
Cma11g00143 304 PANTHER PROTEIN RKD1-RELATED 56 269 - -
Cma11g00143 304 MobiDBLite consensus disorder prediction 123 140 - -
Cma11g00143 304 PANTHER PROTEIN RKD4 56 269 IPR044607 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00143 - - - cmax:111471365 573.163
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00191 Cma11g00143 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00624 Cma-Chr3:5422972 Cma11g00143 Cma-Chr11:765229 7.18E-25 dispersed
Cma11g00143 Cma-Chr11:765229 Cma12g00657 Cma-Chr12:3506288 7.43E-09 dispersed
Cma18g01327 Cma-Chr18:10140319 Cma11g00143 Cma-Chr11:765229 1.13E-31 transposed
Cma10g00190 Cma-Chr10:865735 Cma11g00143 Cma-Chr11:765229 3.01E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00143 CST 137 262 AtRKD Transcription Factor Family AT1G18790 68.4 3.5e-39 159.5
Cma10g00190 CST 330 463 AtRKD Transcription Factor Family AT1G18790 64.7 2.3e-38 156.8
Cma10g00190 CST 345 513 AtRKD Transcription Factor Family AT1G74480 54.7 5.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35780 PF02042 RWP-RK 3.50E-20 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00143 Cma_Chr11 FPKM 0.467196 0.696508 0.779 0.69458 0.449477 0.600875 0.618254 3.860024 4.026647 4.026525