Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00159 ATGGCGGATCATTCTGTTGGTCCCGCCAGTTTCTGGACTCAAGCCAATGCTCTGCTCAGGAAGAACTTGACTTATCAGCCCAAATACAGATGTGGTTGTACATGTATTGATACTAATGCAGATGGTACTTGTGAAGAAGTCTGTGGAATTCAATATTCAACTTTGGAACAAGCTGCCAGTTGCCCAATTGAAAGCCCACCCGAATGGCCTCCTTTGTTGCATATGCCAGCTCCCGAGTTTCGCGCTGTTAGAGCCAGTTTTAATCCACTTATGGACTTACCGGACGAGTCATGCAGGCCAACGGGGACGTGTCCTGCAACTGTACTTTTCACTGGAACTAATCAATCTCTTGGAGAAATTCTGGTTGGAAGCATGTTCACAAATTCATTCAATCTGAATTCCAACAATGTTTCAGATAGTTTAGGTTTTAATGTGGTGGGCTCAAGCACGATGATTAAGGATAACAACTTTCTGGAGCCAGCTTTTGCTTCAAACCTTCCTTTGTATAATGTGCAACTTCAGTGCACAGGAAACTCTTCTCTGACTGTTATATGTGTTCAAGGCTTACATTTGCGGCGCAACAGTGTTTCTGAGGTCAATGATGAGATGTATAAAGGATTTCATAAGGGAAATTCAGAGGGGAAAGTTAATGAAATCCTTGCAGGTTTTGATTTCTTAAACTCAAATGCAAATAGCTTCAATGTTAGCGTTTGGTATAATTCAAGTATCAGAAACGAATCTGGATATTTTCCTCCGACATTACTGCGTGTTCCACGCTCAGTGAATCTAGCAACCAATGCCTACCTTAAAAATTTGGTAGGACCAGGAACAGAAATTCCTTTTGAGTTCGTGAAAGAAATGCCAAAGGAGGAATCCAAGCTCAGGCTCGATCTATCCTCTTTGCTTGGCACTCTTTTCTTTACTTGGGTCGTTCTGCAGCTTTTCCCTGTTGTATTGACATCATTGGTTTACGAGAAGCAACAGAAGCTGAGAATCATGATGAAAATGCATGGCCTAGGCGACGGGCCTTATTGGTTGATCTCTTATGCATATTTCCTTACAATATCTGCCATTTACATGCTATGTTTTGTGGTATTTGGCTCAGTTATAGGGTTAAAATTTTTCACATTGAACGACTACAGCATCCAAGTTGTGTTTTATTTCCTCTACATAAACTTGCAAATTTCTTTGGCTTTCTTAACTGCAGCATGGTTCACAAATGTAAAGACTGCTGCAGTCATAGCTTACATACTCGTATTCGGATCGGGGCTCTTAGGCGGCTTCCTTTTTCATTTTTTTCTTGAAGACCCATCATTTCCAAATGCCTGGATTATAGTATTGGAGTTATACCCTGGCTTTTCTCTATATCGTGGATTATACGAGTTTGCACAGTATTCCTTCATTGGAAACTTTATGGGGAGTGATGGAATGCGTTGGGGGAAGTTGAGTGACGAACTTAACGGGATGCAAGATGTGATGATTATCATGGTTGTAGAGTGGTTGTTGGTATTGTTGGTTGCATATTATGTAGATCAAATTTCATCCTCTGGTGGTGGTAAAAGTCCTCTATTTTTCTTGAGAAGGTTTGGGAAAAAGGCCGCTGCATCTTTTCGGTTGCCAAGTTTGCGAAAGCAAGGTTCTAAAGCCTTTAGGGAGAAGGTTGAACAGTTAATACTCGAACCAGATACGAGTCATGCCATTGTGTGTGACAACCTCAAAAAGGTCTATCCAGGAAGAGATGGAAATCCTGAGAAGTTTGCTGTAAAAGGTTTATCTCTTGCTGTTCCTCGAGGGGAGTGTTTCGGCATGCTCGGTCCAAATGGAGCAGGGAAAACCTCATTTATCAGTATGATGATTGGCCTCACAAAGCCGAGTGCTGGCACGGCGTTTGTCCAAGGTCTGGATATACGAAACGATATGGATATGATATATACCAACATGGGTGTATGTCCACAGCATGACCTGCTATGGGAACAACTCACAGGAAGAGAGCACCTACTCTTCTATGGTAGACTTAAGAATCTACGAGGCTCCGCACTAACTGAAGCAGTGGAAGAGTCTTTGAAGGGTGTCAATCTGTATCATGGAGGAGTTGCAGATAAACAAGCTGGGAAGTACAGTGGGGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGAGACCCCAAAGTCGTTTACATGGACGAGCCAAGCACTGAGCTTGATCCAGCTTCAAGAAACAGTTTATGGAATGTGGTGAAGCGCGCAAAGCGAGATCGAGCTATAATTCTTACCAGTACCTCTCTTCTCCTTCTCATTGAACTCAATTTATCATCACAAAATGTTTGA 2334 42.29 MADHSVGPASFWTQANALLRKNLTYQPKYRCGCTCIDTNADGTCEEVCGIQYSTLEQAASCPIESPPEWPPLLHMPAPEFRAVRASFNPLMDLPDESCRPTGTCPATVLFTGTNQSLGEILVGSMFTNSFNLNSNNVSDSLGFNVVGSSTMIKDNNFLEPAFASNLPLYNVQLQCTGNSSLTVICVQGLHLRRNSVSEVNDEMYKGFHKGNSEGKVNEILAGFDFLNSNANSFNVSVWYNSSIRNESGYFPPTLLRVPRSVNLATNAYLKNLVGPGTEIPFEFVKEMPKEESKLRLDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWLISYAYFLTISAIYMLCFVVFGSVIGLKFFTLNDYSIQVVFYFLYINLQISLAFLTAAWFTNVKTAAVIAYILVFGSGLLGGFLFHFFLEDPSFPNAWIIVLELYPGFSLYRGLYEFAQYSFIGNFMGSDGMRWGKLSDELNGMQDVMIIMVVEWLLVLLVAYYVDQISSSGGGKSPLFFLRRFGKKAAASFRLPSLRKQGSKAFREKVEQLILEPDTSHAIVCDNLKKVYPGRDGNPEKFAVKGLSLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPSAGTAFVQGLDIRNDMDMIYTNMGVCPQHDLLWEQLTGREHLLFYGRLKNLRGSALTEAVEESLKGVNLYHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTELDPASRNSLWNVVKRAKRDRAIILTSTSLLLLIELNLSSQNV 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 818944 824641 - CmaCh11G001590.1 Cma11g00159 302668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00159 777 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 567 777 IPR003439 GO:0005524
Cma11g00159 777 ProSitePatterns ABC transporters family signature. 706 720 IPR017871 GO:0005524
Cma11g00159 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 765 IPR027417 -
Cma11g00159 777 CDD ABC_subfamily_A 571 756 - -
Cma11g00159 777 Pfam ABC transporter 589 733 IPR003439 GO:0005524
Cma11g00159 777 SMART AAA_5 597 774 IPR003593 -
Cma11g00159 777 Gene3D - 558 771 IPR027417 -
Cma11g00159 777 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 28 764 - -
Cma11g00159 777 Pfam ABC-2 family transporter protein 219 508 - -
Cma11g00159 777 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 28 764 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00159 - - - cmax:111497371 1496.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00154 Cma-Chr11:805696 Cma11g00159 Cma-Chr11:818944 0 dispersed
Cma11g00159 Cma-Chr11:818944 Cma13g00934 Cma-Chr13:7392459 0 dispersed
Cma11g00155 Cma-Chr11:812973 Cma11g00159 Cma-Chr11:818944 1.77E-58 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00159 Cma_Chr11 FPKM 3.936804 5.309446 0.0 0.111265 0.0 0.0 0.162584 0.709372 0.834527 1.063793