Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00160 ATGGAAGAACCCATCAAGGAGCAGCAATCCACTCCACTTCCAGGGAATTCAGCGAGACCCAAGCTTCAGCGCTATGCTTTGCGATCGGGGACTAAATCGAAGGAGGAGATGCCTCCTGTGCCTGAATTGTCGAATCCGCCTTCTTCTGCCTCTAAAAGGGGTAGAACTATATCCAGTGTGAGTAAAAGTATTGGAGTTCTTGATCTATCTGCCAAGGACAAGTCGGCTAAACCACCAAGAAGACTGTCAATTCCGACTAAAAATGTAAGCCCAACTCGAAAATTAGTTGGCAACATTACACCAATATCCGAGGTCCGGAGGACTGCGAGGAACCAGGGGAAAAGTGACACTCCTGTTTCTGACGTTTCACGGTCGTCAAGCAGAAAAACATTCAACATTCTGTGTTCTACATCATATTGGCTATCACAGATCAAGCTCTCTGAAGCTGCTTCTAAGCATTCGGTGTCACTTGGGTTTTTCAAACTTGCATTAGAGGCAGGGTGCAAGCCTCTTCACCGAATGCGTGATGAACTCAAGGCCTACATAGATCGGTGCAATCTTAATGCAAGTGAACAAGCAGTGAAAGATTTGCTTGAAAGCTACAATGCAGCAGAAGAGACAGAGCAAGTGCAGGTTTCTGAAACCTTTTCTCAGGGGCCTGAAGTGGGAACAAGGTCTTCAGATGATGAAGTTCATAGCTCTTCCTCCACAGTGGAGCCTAGAAATCTCAAACCAAAATCCTTAAGCACTGATGTTACTAAAACTCCCAGGAATCGGGGCCTCTGGAACAAAAATGCTGCTCCAAATTCAACTTCAGAGACAGCGAAAAAACCTGTGAAGAAACCCCAAAGGCCAAACAAGCAAGAACCCATTCAAGGAAAGGAAAAATCCAAGAAACAGGTGAAGAAACAGCTCAGCGAGAAAGTTCCAGCCAGCACGAGTCCTGAAGAAGATTCAGTGCAATCAAACAAAGAAAATTTGGAGGCTCCCCAAATTGAAGTGACATCGACAGAAGAAGTGATATAA 1026 45.22 MEEPIKEQQSTPLPGNSARPKLQRYALRSGTKSKEEMPPVPELSNPPSSASKRGRTISSVSKSIGVLDLSAKDKSAKPPRRLSIPTKNVSPTRKLVGNITPISEVRRTARNQGKSDTPVSDVSRSSSRKTFNILCSTSYWLSQIKLSEAASKHSVSLGFFKLALEAGCKPLHRMRDELKAYIDRCNLNASEQAVKDLLESYNAAEETEQVQVSETFSQGPEVGTRSSDDEVHSSSSTVEPRNLKPKSLSTDVTKTPRNRGLWNKNAAPNSTSETAKKPVKKPQRPNKQEPIQGKEKSKKQVKKQLSEKVPASTSPEEDSVQSNKENLEAPQIEVTSTEEVI 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 826825 829789 + CmaCh11G001600.1 Cma11g00160 302669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00160 341 MobiDBLite consensus disorder prediction 236 276 - -
Cma11g00160 341 MobiDBLite consensus disorder prediction 306 341 - -
Cma11g00160 341 MobiDBLite consensus disorder prediction 277 305 - -
Cma11g00160 341 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 1 337 - -
Cma11g00160 341 MobiDBLite consensus disorder prediction 208 224 - -
Cma11g00160 341 MobiDBLite consensus disorder prediction 208 341 - -
Cma11g00160 341 Coils Coil 187 207 - -
Cma11g00160 341 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 1 337 - -
Cma11g00160 341 MobiDBLite consensus disorder prediction 46 65 - -
Cma11g00160 341 MobiDBLite consensus disorder prediction 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00160 - - - mcha:111007039 547.354
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00181 Cma11g00160 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00160 Cma-Chr11:826825 Cma20g00476 Cma-Chr20:2302183 3.26E-11 dispersed
Cma10g00181 Cma-Chr10:829844 Cma11g00160 Cma-Chr11:826825 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g520 . . Bda06g00551 Bda15g00594 . . . Bma12g01002 . . Cma10g00181 Cma11g00160 Car10g00170 Car11g00140 Sed08g0200 . Cpe04g01512 Bhi02g00341 Tan09g2156 Cmetu02g0796 . Hepe09g0134 . . Cla06g01604 Cam06g1778 Cec06g1829 Cco06g1838 Clacu06g1740 Cmu06g1685 Cre06g2501 Cone2ag0859 Cone16ag0153 . . . . . . Blo13g00020 . . . Bpe07g00790 . . Bma08g00209 . Cmo10g00199 Cmo11g00150 . . . . . Cpe18g00804 . . . . . . . . . . . . . . Lsi06g01482 Csa01g00219 Chy02g02514 Cme02g01900
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003808 5 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 0 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00160 Cma_Chr11 FPKM 12.145712 12.835268 7.701543 7.728328 23.657101 19.856663 25.808067 2.002201 2.41532 1.361538