Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00161 | ATGGAGGCTCAACCTTTGCCAACCACAGCTGATGCAGTTCAATCAGCTGGAGAAGATGAAGAACATGCTCCCAAACATAAGGTTCCTTTAATGGCTGACTTGGAGAAGCCTTCCATGGAGCCCCTCTCACTCGCATCTGCCTCTTCAACTTGGAAGGAAGAGGATCATGAGCATGAACAAAGACTAAAAATGGCGAAAGGTGAAATGAGGGAAGTGAAGGAAGAAAACCAGCGGCTAAAAAGGTGTTTGGATCAAATGATGAGGGATTACGAGAGCCTGAAAAGGCAATTCCATGATATGAGTACCATAAACAACGAGGCAGCTGAAGAAGTTGAGGACATGGTTTCACTGACATTAGGAAGATCCTCAAGCGACCAAAACAAGAACACTTGCCCTGAAAGAAAGCCAGATCTTCAGAACATTCAAAGTCCAGCCGACAGTGAACAAGGCAAGGAGGAAGAAGCCGGACAGACTTGGCCGCCGGGTAAAGTGTTGAAGGGGTTGGCAGCGCCGGCGACCGGAGAAGATGAAGTTTCTCAGCAGAATCCTCCGAAGAAGACGAGGGTTTGTGTGCGGGCTCGGTGTGATACGCCAACGCTGAACGATGGGTGTCAATGGAGAAAATATGGGCAGAAGATTGCTAAAGGAAATCCTTGCCCACGAGCTTACTATCGCTGCACCGGCGCACCCTCTTGCCCGGTTAGGAAGCAGGTGCAAAGGAGTGTTGATGATATTTCAATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTACCTGTGTCAGCCATGGCCATGGCTTCGACCACGTCGGCTGCGGCCTCGATGCTCCTCTCGGGTGCTTCCACCTCGACCTCTCGGCCTGGACTAAACCCTTTGGCGATCGGGACAGCGTCTGCAAATCTCCATGGAATGAACATGTACACAAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTAAACCATCCCACAATCACCTTAGACCTCACTTCAAATCCTCCCTCAGCTTCTTCTTCTTCTTCTTCCTCCTCTCCTTTCCACAAAATCCCTTCAACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGGTCTTCTCAACCCAACTTCATGTCTTGGAATACTAATATCAACAAAAATGTATTAGGAATGTCATCAGACCTTGCTAAGCAATTCCCTCCCCATAGTAACATCTACCAAGCTTGCCTACAACAATTTGCCAAACCTTCAACTCCTCCACCTCCGCCTCTACCGGACACGATAGCAGCAGCAACCAAGGCAATTACGTCCGACCCGAGTTTCCAATCAGCATTGGCGGTTGCCCTCAGCTCGATCATCGGCGGCGGAAACGGGGGCGAGGCGGTTCAGGCAATGAGTAGCTATGTCCAAGCAGCACAGGGACAAGGAAGTATGGGGTTTCAGGCAGCTCCATCGTTGACATACTCCACATCCAAGAGTCCTTCATCTCCTGGTGACAGTAGAGACGATGATACCAAGTGA | 1524 | 49.08 | MEAQPLPTTADAVQSAGEDEEHAPKHKVPLMADLEKPSMEPLSLASASSTWKEEDHEHEQRLKMAKGEMREVKEENQRLKRCLDQMMRDYESLKRQFHDMSTINNEAAEEVEDMVSLTLGRSSSDQNKNTCPERKPDLQNIQSPADSEQGKEEEAGQTWPPGKVLKGLAAPATGEDEVSQQNPPKKTRVCVRARCDTPTLNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASTSTSRPGLNPLAIGTASANLHGMNMYTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSASSSSSSSSPFHKIPSTYPPKYPFTSLDFGSSQPNFMSWNTNINKNVLGMSSDLAKQFPPHSNIYQACLQQFAKPSTPPPPPLPDTIAAATKAITSDPSFQSALAVALSSIIGGGNGGEAVQAMSSYVQAAQGQGSMGFQAAPSLTYSTSKSPSSPGDSRDDDTK | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 830454 | 834259 | - | CmaCh11G001610.1 | Cma11g00161 | 302670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 15 | 33 | - | - | |
Cma11g00161 | 507 | SUPERFAMILY | WRKY DNA-binding domain | 193 | 261 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00161 | 507 | Coils | Coil | 55 | 96 | - | - | |
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 120 | 185 | - | - | |
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 120 | 146 | - | - | |
Cma11g00161 | 507 | Gene3D | WRKY domain | 185 | 262 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00161 | 507 | SMART | WRKY_cls | 200 | 260 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 50 | 76 | - | - | |
Cma11g00161 | 507 | ProSiteProfiles | WRKY domain profile. | 195 | 261 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 482 | 497 | - | - | |
Cma11g00161 | 507 | PANTHER | WRKY TRANSCRIPTION FACTOR 61-RELATED | 140 | 497 | - | - | |
Cma11g00161 | 507 | PANTHER | WRKY TRANSCRIPTION FACTOR 61-RELATED | 43 | 132 | - | - | |
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 482 | 507 | - | - | |
Cma11g00161 | 507 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Cma11g00161 | 507 | Pfam | WRKY DNA -binding domain | 201 | 259 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00161 | 507 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 43 | 132 | IPR044810 | GO:0003700 | |
Cma11g00161 | 507 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 140 | 497 | IPR044810 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00161 | Cma13g00932 | CCT | |
Cma11g00161 | Cma13g00932 | ECH | |
Cma10g00180 | Cma11g00161 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00161 | Cma-Chr11:830454 | Cma19g00912 | Cma-Chr19:8235872 | 3.92E-57 | dispersed | |
Cma10g00180 | Cma-Chr10:826059 | Cma11g00161 | Cma-Chr11:830454 | 1.27E-146 | wgd | |
Cma11g00161 | Cma-Chr11:830454 | Cma13g00932 | Cma-Chr13:7382978 | 3.56E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35784 | PF03106 | WRKY | 8.70E-24 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00161 | - | - | cmax:111471155 | 937.947 |