Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00161 ATGGAGGCTCAACCTTTGCCAACCACAGCTGATGCAGTTCAATCAGCTGGAGAAGATGAAGAACATGCTCCCAAACATAAGGTTCCTTTAATGGCTGACTTGGAGAAGCCTTCCATGGAGCCCCTCTCACTCGCATCTGCCTCTTCAACTTGGAAGGAAGAGGATCATGAGCATGAACAAAGACTAAAAATGGCGAAAGGTGAAATGAGGGAAGTGAAGGAAGAAAACCAGCGGCTAAAAAGGTGTTTGGATCAAATGATGAGGGATTACGAGAGCCTGAAAAGGCAATTCCATGATATGAGTACCATAAACAACGAGGCAGCTGAAGAAGTTGAGGACATGGTTTCACTGACATTAGGAAGATCCTCAAGCGACCAAAACAAGAACACTTGCCCTGAAAGAAAGCCAGATCTTCAGAACATTCAAAGTCCAGCCGACAGTGAACAAGGCAAGGAGGAAGAAGCCGGACAGACTTGGCCGCCGGGTAAAGTGTTGAAGGGGTTGGCAGCGCCGGCGACCGGAGAAGATGAAGTTTCTCAGCAGAATCCTCCGAAGAAGACGAGGGTTTGTGTGCGGGCTCGGTGTGATACGCCAACGCTGAACGATGGGTGTCAATGGAGAAAATATGGGCAGAAGATTGCTAAAGGAAATCCTTGCCCACGAGCTTACTATCGCTGCACCGGCGCACCCTCTTGCCCGGTTAGGAAGCAGGTGCAAAGGAGTGTTGATGATATTTCAATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTACCTGTGTCAGCCATGGCCATGGCTTCGACCACGTCGGCTGCGGCCTCGATGCTCCTCTCGGGTGCTTCCACCTCGACCTCTCGGCCTGGACTAAACCCTTTGGCGATCGGGACAGCGTCTGCAAATCTCCATGGAATGAACATGTACACAAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTAAACCATCCCACAATCACCTTAGACCTCACTTCAAATCCTCCCTCAGCTTCTTCTTCTTCTTCTTCCTCCTCTCCTTTCCACAAAATCCCTTCAACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGGTCTTCTCAACCCAACTTCATGTCTTGGAATACTAATATCAACAAAAATGTATTAGGAATGTCATCAGACCTTGCTAAGCAATTCCCTCCCCATAGTAACATCTACCAAGCTTGCCTACAACAATTTGCCAAACCTTCAACTCCTCCACCTCCGCCTCTACCGGACACGATAGCAGCAGCAACCAAGGCAATTACGTCCGACCCGAGTTTCCAATCAGCATTGGCGGTTGCCCTCAGCTCGATCATCGGCGGCGGAAACGGGGGCGAGGCGGTTCAGGCAATGAGTAGCTATGTCCAAGCAGCACAGGGACAAGGAAGTATGGGGTTTCAGGCAGCTCCATCGTTGACATACTCCACATCCAAGAGTCCTTCATCTCCTGGTGACAGTAGAGACGATGATACCAAGTGA 1524 49.08 MEAQPLPTTADAVQSAGEDEEHAPKHKVPLMADLEKPSMEPLSLASASSTWKEEDHEHEQRLKMAKGEMREVKEENQRLKRCLDQMMRDYESLKRQFHDMSTINNEAAEEVEDMVSLTLGRSSSDQNKNTCPERKPDLQNIQSPADSEQGKEEEAGQTWPPGKVLKGLAAPATGEDEVSQQNPPKKTRVCVRARCDTPTLNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASTSTSRPGLNPLAIGTASANLHGMNMYTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSASSSSSSSSPFHKIPSTYPPKYPFTSLDFGSSQPNFMSWNTNINKNVLGMSSDLAKQFPPHSNIYQACLQQFAKPSTPPPPPLPDTIAAATKAITSDPSFQSALAVALSSIIGGGNGGEAVQAMSSYVQAAQGQGSMGFQAAPSLTYSTSKSPSSPGDSRDDDTK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 830454 834259 - CmaCh11G001610.1 Cma11g00161 302670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00161 507 MobiDBLite consensus disorder prediction 15 33 - -
Cma11g00161 507 SUPERFAMILY WRKY DNA-binding domain 193 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00161 507 Coils Coil 55 96 - -
Cma11g00161 507 MobiDBLite consensus disorder prediction 120 185 - -
Cma11g00161 507 MobiDBLite consensus disorder prediction 120 146 - -
Cma11g00161 507 Gene3D WRKY domain 185 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00161 507 SMART WRKY_cls 200 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00161 507 MobiDBLite consensus disorder prediction 50 76 - -
Cma11g00161 507 ProSiteProfiles WRKY domain profile. 195 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00161 507 MobiDBLite consensus disorder prediction 482 497 - -
Cma11g00161 507 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 140 497 - -
Cma11g00161 507 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 43 132 - -
Cma11g00161 507 MobiDBLite consensus disorder prediction 482 507 - -
Cma11g00161 507 MobiDBLite consensus disorder prediction 1 76 - -
Cma11g00161 507 Pfam WRKY DNA -binding domain 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00161 507 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 132 IPR044810 GO:0003700
Cma11g00161 507 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 140 497 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00161 Cma13g00932 CCT
Cma11g00161 Cma13g00932 ECH
Cma10g00180 Cma11g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00161 Cma-Chr11:830454 Cma19g00912 Cma-Chr19:8235872 3.92E-57 dispersed
Cma10g00180 Cma-Chr10:826059 Cma11g00161 Cma-Chr11:830454 1.27E-146 wgd
Cma11g00161 Cma-Chr11:830454 Cma13g00932 Cma-Chr13:7382978 3.56E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35784 PF03106 WRKY 8.70E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00161 - - cmax:111471155 937.947