Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma11g00165	ATGGGTCTTTCCATCTGGGCCTTCTCCGCGATTTTAGCAGCAACCCTTTTCAGCCACTGCTCATTTTCGCTCACTGAAGATGGTTTGACATTGTTGGAAATCAAAACTACTTTGAATGACACCAAGAACGTCCTCGCTAATTGGAGCCCTTCGGATGAATCTCCCTGCAAATGGACTGGCATTTCTTGCCATCCCCAGGACTCTCGTGTTAGCTCAATTAATCTACCGTTCATGCAACTAGCAGGGATTATATCTCCTAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGATTGCATGGATATATTCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCATCTACCTGAGGGCTAACTATCTCCAAGGTGGGATTCCATCAAATATTGGAAACCTTTCTTACCTCACCATACTTGATTTATCAAGCAATTCCCTTAAGGGCAGTATACCATCATCAATTGGTCGTCTCACAAACTTACGCAATCTGAATTTGTCTACCAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGGAATAACTCGTTCTTTGGTAATCAAGATCTTTGTGGTCGGCAAGTGAACAAGCCGTGTCGAACCTCACTGGGGTTTCCTGCTGTTTTACCACATGCTGGAAGTGATCAAGCTGCAGTTCCTGTGAAACGATCCTCTCATTACATCAAAGGACTGTTGATTGGTGCAATATCGACAGCAGGGTTCGTGTTGGTCATACTTCTTGTACTCATGTGGACTCGTTTGGTATCCAAGAAAGAAAGAACTGCAAAGAGTTACTTGGAAGTTAAGAAGCAAAATACTCGCGAATCAAGTGCAAAGCTCATTACATTCCATGGTGATCTACCGTACCCGACGTGTGAGATCATAGAAAAGCTGGAGGCCCTTAAAGAAACAAATATTGTTGGCTCAGGAGGGCTCGGCACCGTGTATCGGATGGTCATGAATGATCGTGAAGCATTTGCTGTAAAGAAAATTGATAGGAGTCAAGATGGTTCAGATCAAGTAATTGAAAGAGAATTGGAGATCTTGGGAAGCATTAAACACATAAATTTAGTGACATTGCGTGGTTATTGCAGGCTCCCTTCTTCAAAGCTTCTTATATATGACTATCTCGCAGCTGGTAGCTTGGATGATTTCTTACATGAATATGGACCCGAAAGGTCTTTGGATTGGAGTGCCCGGTTAAACATAGCGCTCGGCTCCGCTCGAGGACTGGCATACTTGCACCATGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTCGACGAGAACTTAGAGGCGCATGTATCCGACTTTGGTCTCGCAAAGCTTTCGGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGTCTCCAGAATACTTGCAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTGTTGCTGGAGCTTGTAACAGGGAAGAGGCCCAGTGATCCATTTTTCTCAAAAAGGGGCTTAAATGTTGTTGGTTGGTTGAACACACTCCGGGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGTGGAAACTGTAGAAGTGATTCTTGAAATAGCAGCAAGGTGCACCAATGGCAACCCGGCTATGCGGCCTACAATGATCCAAGTTCTGCAGCTGCTAGAGCGAGAGGTGATGTCGCCCTACCCGAGTGATTACTCCGAGTCTCACTCGGATTATTCGTGA	1803	44.37	MGLSIWAFSAILAATLFSHCSFSLTEDGLTLLEIKTTLNDTKNVLANWSPSDESPCKWTGISCHPQDSRVSSINLPFMQLAGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRAIYLRANYLQGGIPSNIGNLSYLTILDLSSNSLKGSIPSSIGRLTNLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQDLCGRQVNKPCRTSLGFPAVLPHAGSDQAAVPVKRSSHYIKGLLIGAISTAGFVLVILLVLMWTRLVSKKERTAKSYLEVKKQNTRESSAKLITFHGDLPYPTCEIIEKLEALKETNIVGSGGLGTVYRMVMNDREAFAVKKIDRSQDGSDQVIERELEILGSIKHINLVTLRGYCRLPSSKLLIYDYLAAGSLDDFLHEYGPERSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDENLEAHVSDFGLAKLSVDGDSHVTTVVAGTFGYLSPEYLQSGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGLNVVGWLNTLRGEDQLENIVDNRCKNADVETVEVILEIAARCTNGNPAMRPTMIQVLQLLEREVMSPYPSDYSESHSDYS	600

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	851940	855483	-	CmaCh11G001650.1	Cma11g00165	302674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma11g00165	600	Gene3D	Ribonuclease Inhibitor	25	211	IPR032675	-
	Cma11g00165	600	SUPERFAMILY	Protein kinase-like (PK-like)	290	581	IPR011009	-
	Cma11g00165	600	Pfam	Protein kinase domain	313	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cma11g00165	600	Pfam	Leucine rich repeat N-terminal domain	26	63	IPR013210	-
	Cma11g00165	600	ProSiteProfiles	Protein kinase domain profile.	311	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cma11g00165	600	Gene3D	Phosphorylase Kinase; domain 1	271	386	-	-
	Cma11g00165	600	SUPERFAMILY	L domain-like	25	186	-	-
	Cma11g00165	600	Gene3D	Transferase(Phosphotransferase) domain 1	387	590	-	-
	Cma11g00165	600	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	35	592	-	-
	Cma11g00165	600	PANTHER	REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED	35	592	-	-
	Cma11g00165	600	Pfam	Leucine rich repeat	118	174	IPR001611	GO:0005515

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cma11g00165	Cma18g00130	CCT
	Cma10g00179	Cma11g00165	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma01g01343	Cma-Chr1:9597494	Cma11g00165	Cma-Chr11:851940	0	dispersed
	Cma09g00750	Cma-Chr9:3591082	Cma11g00165	Cma-Chr11:851940	0	dispersed
	Cma11g00165	Cma-Chr11:851940	Cma18g00130	Cma-Chr18:635192	2.48E-29	dispersed
	Cma10g00179	Cma-Chr10:821374	Cma11g00165	Cma-Chr11:851940	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	68871	PF00069	Pkinase	4.50E-43	CL0016	Cma	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma11g00165	-		-	csv:101217728	1087.4