Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00166 ATGGATGAAAAGGGCGAGAAGCCTGAGGTTTTGGAAGCTGTATTGAAGGAAACTGTGGACTTGGAAAATATACCCATTGAGGAGGTTTTTGATAATTTGAGATGCGGCAAAGAGGGTCTTACCACAGCGGCTGCTGAGGCACGGCTTGTTATTTTTGGTCTCAACAAGCTTGAGGAGAAGAAGGAAAGTAAATTCTTGAAATTTTTGGGGTTTATGTGGAATCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCACTGTTGCTTATCAACTCAACAATTAGTTTTATTGAGGAAAACAATGCCGGAAACGCTGCAGCTGCACTAATGGCTAGTTTAGCTCCCCAAGCCAAGATTCTTCGGGATGGAAGGTGGAGTGAGCAAGATGCTGCGGTTTTAGTTCCTGGTGATATTATAAGCATCAAACTTGGGGACATTATTCCAGCTGATGCTCGTCTTCTTGAGGGAGATCCATTGAAAATTGATCAGTCTGCTCTTACAGGTGAATCTCTTCCTGTTACAAAAGGTCCTGGCGATGGCATATACTCTGGTTCTACTTGCAAACAAGGCGAGATTGAAGCGGTTGTTATTGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACCAATCAAGTGGGTCACTTCCAAAAGGTCTTAACTGCAATAGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTACAGAAATTATTGTCATGTACCCAATTCAAGATCGGGAATATCGTCCTGGAATTGACAATCTTCTTGTGCTTCTGATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCCATTGAAGAGATGGCAGGTATGGATGTGCTTTGCAGTGACAAGACTGGAACACTGACATTAAACAAGCTCACTGTTGACAAAAATCTTGTTGAGGTTTTTGTTAAAGGAGTGGATGTGGATACTGTGGTTCTAATGGCAGCCCGGGCGTCAAGAACAGAGAACCAAGATGCTATTGATACTGCCATTGTTGGGATGCTTGCTGACCCAAAAGAGGCTCGTGCTGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACTGATAAGCGGACTGCATTGACTTACTTAGATCGTGAGGGTAAAATGCATAAAGTCAGCAAAGGTGCACCAGAGCAGATTCTGAACCTTGCATACAATAGGTTGGATATTGAGCGCAAAGTTCATGCTGTGATTGACAAGTTTGCAGAACGAGGTTTACGCTCGCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTAGAAGGGAAAGTGCTGGAGCTCCATGGCAGTTTATTGGCCTTCTGCCACTTTTCGACCCACCAAGGCATGACAGTGCAGAGACAATAAGGAGGGCGTTAAATCTTGGAGTGAATGTGAAGATGATTACTGGTGACCAGTTGGCCATAGGAAAGGAAACCGGACGACGATTAGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTGGGCCAAAACAAGGACGAGTCAATTGCTGCTTTACCGGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCGAGGAAACATATCTGTGGGATGACTGGGGATGGAGTAAATGATGCTCCAGCCCTTAAAAAAGCTGACATAGGCATAGCTGTCGCCGATGCTACTGATGCTGCTCGTAGTGCTTCAGACATAGTCCTCACAGAGCCTGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTTGTATGGAAATTTGACTTCCCACCTTTTATGGTGCTCATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCGAAGGATAGAGTGAGACCATCTCCGTTGCCTGATAGCTGGAAGATGGGTGAAATTTTTACCACTGGCATTATACTTGGTGGCTACTTGGCAATGATGACTGTGATCTTCTTTTGGGCAGCCTATAAAACAGACTTCTTTCCACGAGTGTTTGGGGTAGCAACTCTCGAGAAAACTGCTCACGATGACATTAGGAAACTTGCCTCAGCAGTGTATCTGCAAGTTAGCACTATAAGTCAGGCTCTCATATTTGTTACACGTTCGCGAGGTTGGTCATATGTGGAACGCCCTGGGTTATTATTGGTTGCAGCTTTTCTGGTTGCGCAGCTGATTGCTACATTAATTGCGGTTTATGCAAACTGGAGCTTTGCTGCTATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATTATCTTTTACATCCCACTTGATATCATAAAATTCATCATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCCTTTACGAGGCAAAAGGATTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCCGATGCGAAGTTCCACGACCGAAATCACTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTCCACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGATGAAAGGACTGGACATAGACACAATTCAGCAAGCTTACACAGTGTGA 2877 44.66 MDEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCGKEGLTTAAAEARLVIFGLNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYLDREGKMHKVSKGAPEQILNLAYNRLDIERKVHAVIDKFAERGLRSLAVAYQEVPDGRRESAGAPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALVWKFDFPPFMVLIIAILNDGTIMTISKDRVRPSPLPDSWKMGEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIIKFIIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKFHDRNHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRMKGLDIDTIQQAYTV 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 856024 861698 - CmaCh11G001660.1 Cma11g00166 302675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00166 958 PANTHER CALCIUM-TRANSPORTING ATPASE 6 938 - -
Cma11g00166 958 SFLD Haloacid Dehalogenase 316 644 - -
Cma11g00166 958 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Cma11g00166 958 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Cma11g00166 958 Gene3D - 137 221 - -
Cma11g00166 958 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Cma11g00166 958 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Cma11g00166 958 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Cma11g00166 958 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Cma11g00166 958 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Cma11g00166 958 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Cma11g00166 958 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Cma11g00166 958 PANTHER PLASMA MEMBRANE ATPASE 1 6 938 - -
Cma11g00166 958 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 39 815 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma11g00166 958 SFLD p-type atpase 316 644 IPR044492 -
Cma11g00166 958 Gene3D - 331 630 IPR023214 -
Cma11g00166 958 Pfam E1-E2 ATPase 135 313 - -
Cma11g00166 958 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Cma11g00166 958 Gene3D - 907 958 - -
Cma11g00166 958 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 673 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 351 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 Gene3D - 99 824 - -
Cma11g00166 958 SUPERFAMILY HAD-like 330 640 IPR036412 -
Cma11g00166 958 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Cma11g00166 958 CDD P-type_ATPase_H 39 850 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma11g00166 958 Gene3D - 346 493 IPR023299 GO:0000166
Cma11g00166 958 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma11g00166 958 Coils Coil 909 929 - -
Cma11g00166 958 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 856 IPR023298 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00176 Cma11g00166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00166 Cma-Chr11:856024 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma10g00176 Cma-Chr10:803743 Cma11g00166 Cma-Chr11:856024 0 wgd
Cma11g00166 Cma-Chr11:856024 Cma13g00925 Cma-Chr13:7347211 1.62E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00166 K01535 - csv:101217264 1741.09