Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00167 ATGGGGCCTAAGAAGAAAATCATTGATCCGCGTTCTAAACAATCTCCTGCTGCTCGTGGAGTTGTTGTGGATGTTCCAAGCTCAGCGAACGCAGCCGACCAGAATTCAATACCTGAAAAGGCTAGTAACCACAACCAAAGTAGGATCGAGCCGGTGCTTCTCAATGGACCGGATGGGTTGTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTACCGCACTTCGGCGCGGGAACCACACTAAGGCACTGAGGCTTATGAAGGAGTTGAGCTCCAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTGTGTAAAGGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCCAGCTCTCACCTAACTCTATCGAGTTTTCCCATTTCTATGCAAATTTGCTGTACGAGGTTGCAAACGATGCGAAGGAGTACGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCCAAGGAAAGCTTGCAGGATGAAAAGAGTCAGAAGATACCTACTGCAGAAGCACGGATTACACATGTTCAAACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCGATATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATAAGAAGAGTGACAGAGGACCCAATGGAGGTGAGATTGGTTCAGGCTAGAAGGGCAAATGAAATTAAGAAGGCAACCAAAACACCCGAGGAGAGAAGAAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTGTGAGACACCTCAAATTCAAAATGAAGAAGGTAAAGTTGATCGGTCCCTAGATTCATCTTCAGGATCTGGTACAAGAGTTGGCGAGCGACGGAAACATGGCAATTTACGGAAACAGGGATCTTCAGCTGAAAGGAGGGATTTGGTTCATTCTTTTTGGAATTCCATGAGTATCGAAGCAAAGAAAGATTTGTTTAAGATCAAGATAAGTAATCTTAAGGCGCATTTTAGTTCTTCAAAGGATGCTTCGGCAAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATGATGCCAATAAAACATGGAAATTTTGGGTTTGCTGCAGATGTGATGAGAAATTTGTGGATTCGGATTCCCATATGCACCATGTGGTTCAAGAGCACATGGGTAACCTTTTACCAAAAATGCAATCAATTTTGCCTCAGAATGTTGATGATGAATGGACCAAAATGATTCTTAATTGCTCCTGGAAAGCATTGGATGTTTCAGCTGCAGCTAAAATGCTCACCACTGAAACAAAATGCAAAGATTCTGAGTTGGTTGTAGATATCTTCCCACAGCATCATTCAGAATGTGATAACTATTTCAAAGATGCATGGGATTCTTCTCCAGAGAAGCATAAATATGGGGATAGTTTAAATGAATGCCGTCTTTCTGAAAAAATTACCAACAACGGATCTATGACCTATCATGAAAACCAGGGTTCTGTGGCATCATATTCCTCATCTGACAGTTTTCCTGTATCTGATGATCCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTGCTTATAAGACATAAATATCTTGCTGCTAGCCATTTAAACAAGGTTATACAATTTGCAATAGATGAGCTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCAGTCCTGTGGTATTGGTAGATACTCTGATAAAATTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAAGCGGTTGAAGTCAGAGAGAAAGTTGTTCTCAGTGAAGATGGATCACTTCTCCTCCTGAATAAGTGTTTGCTGTCATCTGATATCACTCATGCTGATGTTCCGGTGGCAGCTGCATATCATATGCTTGCTGCAACTGCCAAGGATCTTACTTCAAATGGGGTTCTTTCTGATGTTGACCCCTTTCTTTCCTGGATATATGCAGGTCCCTCTAGTGGGGAACAGTTGGTCTCATGGGAAAAAACAAAGGAAGAAAAGATACAGCGACGAATGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCATCTCCAGAGTCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCGTTGCAGTCAGTGGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGGGAAGCTTTGAATGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAAGCGAAGGGAGGAGCTTATTGAGGCTGAAAATGGTGTGCTGTTAATCAGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTTTGAAAGAAGCAGAAACTCTGAATGTCAATCAATTTGGATACCAGGAAACTTTTGCCAGCGTGTCTCCACAGTTAGGAGATCTGGAATCTGGTGAAGATGAAGAACGGAGAGCTAAGGATTATTTGCATGAAGTTGATACTTGTATAGAAGTTGCAATACAGAGACAGAAGGAACAGTTATCTATTGAGATTAGCAAAATTGATGCCCGCATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTCGAACCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTAAACTCATATTTGAGGGCACATTTAGAAGATTTGGCTGAAAAGGATGCCACAAAGAAGTCTGATGCTGCAAGCGAAGCATTTTTGGCCGAACTGGCACTGGATTCGAAGAAGGGTATCAGAGGAGGAACTGATAATTCAAGACATGCACATGAAAAACCAAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGTCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCTTCGTGGTCAGGCTGTCGATGGAGATCCCTTTCCAGTTTCTTCTGATGGTGATGCTGCAGAGGTGGATATTGCTGTTTTTGAGAATGTTGATGCTTTAAGACTACAGGAGGAAGAGCTCAGGCGCAAAATTGAGCTGGAAGCTGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATTTGGCTGAACTGCAAAAGAAATCTGCCCAGACAACTCATAATAATCTCGCTGGACTTGTCCCCAATGTTGAAGGTGCTGATAAACATTTCAAGCCTTCTGTGGTGGATAAATTGGCAGAAAATGATTTGGTTTCCGACTTGTCTGGGAATGGTCCTGCCATGCGAAATGCTTTGTCAGGTGTCTCCAATGTAGGAGTTATAGAGAATAGTCTGCCGTCATCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAACGTAGCCTTTGACAACCAATTGACTGAACAAGTTAGATATCATGGCAATCCCCTGCAAGATAGTGTTAATCCACTTCTTGAAGATAATAGTACAAAGACTTCGAGACAACATGTGGAGGATGAAGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTATGAGTTCCAGGACACCATTGATCAGTCATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACGCAATGTAGAAAATGTGCAGGCAGCTGGTATGTTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTTTGAATGTGATTATTCAGTCGTTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTTGCTGCCTTGAACAAGGCATCTGCAGATTCTAGAAGAGAAGCAGTCGCCCCCACCTCTTTGAGAGTAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCTGAAGTTTTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTGCTGGTTCGAGTGTTTCTGATACAGACACAGTAGAAAGCAATTGCATAGGGTCTTGGGACTGTTCAAGTGACACTTGTTTGGTACATTCCATCTTTGGAATGGACATTTTTGAACGAATGAATTGCTACAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCTAGTGCTCTTCGGACAACGAAGGTTATGTGTTCAGAAAGCTCCTTCGATGAGCTTCTGAATGTTGTTGAAATGAATCATCAGCTAGTATGTGATCAGGATGTTGGTGGATGTGGAAAACTCAATTACATTCATCACTTCCTCTCCGCACCACCACATGTATTCACAACAGTCTTGGGCTGGCAGAAAACTTGTGAGAGTGCTGATGACATCACAGAGACATTAGCTGCTCTAAGTACTGAGATAGATGTCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAATGTCCATAATTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCGTACAGTTGTGACAAGAAATGCTGGATAATGTATGATGATAGAACCGTTAAGGTAATTGGTGGCTGGGCTGATGTTCTTACCATGTGTGAAAAAGGACACTTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4848 41.83 MGPKKKIIDPRSKQSPAARGVVVDVPSSANAADQNSIPEKASNHNQSRIEPVLLNGPDGLSYSTIKLECERALTALRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTICVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEVANDAKEYEEVVQECERALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKCETPQIQNEEGKVDRSLDSSSGSGTRVGERRKHGNLRKQGSSAERRDLVHSFWNSMSIEAKKDLFKIKISNLKAHFSSSKDASANEVISEALSFYDANKTWKFWVCCRCDEKFVDSDSHMHHVVQEHMGNLLPKMQSILPQNVDDEWTKMILNCSWKALDVSAAAKMLTTETKCKDSELVVDIFPQHHSECDNYFKDAWDSSPEKHKYGDSLNECRLSEKITNNGSMTYHENQGSVASYSSSDSFPVSDDPERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFAIDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELSQSCGIGRYSDKITGQIEDSKSDKQAVEVREKVVLSEDGSLLLLNKCLLSSDITHADVPVAAAYHMLAATAKDLTSNGVLSDVDPFLSWIYAGPSSGEQLVSWEKTKEEKIQRRMEIFQMLEKEFYHLQSLCERKCEHLNYEEALQSVEDLCLEEGKKREALNEFIPKSYESVLRKRREELIEAENGVLLISSRFELDAVTNVLKEAETLNVNQFGYQETFASVSPQLGDLESGEDEERRAKDYLHEVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAASEAFLAELALDSKKGIRGGTDNSRHAHEKPKEKKRSKEFRKVKDSKVVSGPEQDVLRGQAVDGDPFPVSSDGDAAEVDIAVFENVDALRLQEEELRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTTHNNLAGLVPNVEGADKHFKPSVVDKLAENDLVSDLSGNGPAMRNALSGVSNVGVIENSLPSSDRKKGRKGRRHKVSIKPVDGNQPSPSDKDNVAFDNQLTEQVRYHGNPLQDSVNPLLEDNSTKTSRQHVEDEEERFQADLKKAVRQSLDAFQEQQKLPLIMSSRTPLISHGEVDSNGLPSNERNVENVQAAGMFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALNKASADSRREAVAPTSLRVALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTAGSSVSDTDTVESNCIGSWDCSSDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTTKVMCSESSFDELLNVVEMNHQLVCDQDVGGCGKLNYIHHFLSAPPHVFTTVLGWQKTCESADDITETLAALSTEIDVSVLYRGLDPKNVHNLVSVVCYYGQHYHCFAYSCDKKCWIMYDDRTVKVIGGWADVLTMCEKGHLQPQVLFFEAVN 1615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 870841 879796 + CmaCh11G001670.1 Cma11g00167 302676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00167 1615 MobiDBLite consensus disorder prediction 962 996 - -
Cma11g00167 1615 MobiDBLite consensus disorder prediction 1140 1177 - -
Cma11g00167 1615 Coils Coil 1212 1232 - -
Cma11g00167 1615 Gene3D Tetratricopeptide repeat domain 62 202 IPR011990 GO:0005515
Cma11g00167 1615 MobiDBLite consensus disorder prediction 964 996 - -
Cma11g00167 1615 Coils Coil 119 139 - -
Cma11g00167 1615 Coils Coil 1032 1068 - -
Cma11g00167 1615 MobiDBLite consensus disorder prediction 1 50 - -
Cma11g00167 1615 Pfam Protein of unknown function (DUF629) 341 874 IPR006865 -
Cma11g00167 1615 Pfam Protein of unknown function (DUF627) 71 181 IPR006866 -
Cma11g00167 1615 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
Cma11g00167 1615 MobiDBLite consensus disorder prediction 317 334 - -
Cma11g00167 1615 SUPERFAMILY TPR-like 71 181 IPR011990 GO:0005515
Cma11g00167 1615 MobiDBLite consensus disorder prediction 28 50 - -
Cma11g00167 1615 MobiDBLite consensus disorder prediction 294 334 - -
Cma11g00167 1615 MobiDBLite consensus disorder prediction 1193 1215 - -
Cma11g00167 1615 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1615 - -
Cma11g00167 1615 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1282 1614 IPR028889 -
Cma11g00167 1615 MobiDBLite consensus disorder prediction 1193 1208 - -
Cma11g00167 1615 CDD Peptidase_C19 1374 1612 - -
Cma11g00167 1615 SUPERFAMILY Cysteine proteinases 1282 1612 IPR038765 -
Cma11g00167 1615 Pfam Ubiquitin carboxyl-terminal hydrolase 1283 1591 IPR001394 GO:0004843|GO:0016579
Cma11g00167 1615 Gene3D Cysteine proteinases 1266 1613 - -
Cma11g00167 1615 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1615 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00173 Cma11g00167 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00173 Cma-Chr10:785799 Cma11g00167 Cma-Chr11:870841 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00167 - - mcha:111007268 2744.53