Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00169 | ATGGAAGCTCCTCCGAGCAACAGATGGATTGCTACAGTTGCCAGCATTTGGATCCAATGCATTTGCGGTCCTTCCTACACCTTCGGCATTTACTCCTCCGCCCTCAAATCATCTCAAAACTACAGTCAATCCACTCTCGACACTGTCTCCGTCTTCAAGGACATCGGAGCCACCGCCGGAGTTCTCGCTGGCTTACTCGACTCCGCTGTCGTCTCCACGGATCGCCCCCGTCCCCCATGGATCGTCCTCTCCGTCGGAGCAATTCAGTGCTTCCTTGGTTATATTTTCATTTGGGCTGCCGTCTCCGGTTTAATCCCTCGGCCGCCGGTGTGGGCGATGTGTTTGTTCATGTTCTTAGCCGTCCATGCCCAAGTCTTCTTCAACACGGCAAATGTCGTCACTGGCGTTCATAACTTCCAGCTCTACGGCGGCACCATCATCGGCATTCTTAAGTGGAGCAGTTCTGATCCAATCCTAGAACACATTCTACAACGGAGACCCAATAAATTATCTTCTGATGCTGGCGATTTTACCGGCGCTCACGACTGTTCTGATCATGAGATTCGTCATAATCGAAAAAACAGAGATCGAGCACAAACAGATGACTCTGTTTCCAAAACCAAGCTTCAAAATACAGACTATTCCGTTGAATATCATCAAATTCCCGGTGAAGAACAGAGAAATGATCAGCTAATGATGGTTACAAATGGAGAAATGAACGTAATCAAGGCAATTGGCACGGTGAATTTCTGGCTATTGTTTTCTGCGATGATGTGCGGAATGGGTTCTGGGTTAGCCACCATAAACAACATGAACCAACTGGGCCAGTCTTTGGGCTACAAAACAGTCGAAATCTACACATTCGTTTCACTGTGGAGCATTTGGAATTTCCTTGGGCGGTTGGGATCCGGCTATGCCTTTGATCTTCTCCTCCGGGAATTAGGCTGGGCGAGGCCATTGTTAATGGCCGTCGCCTTGTTGACGATTAGCGTCGGCCATATCATCATAGCTTCAGGATTCTCCGGGAATTTGTACTTGGGGTCGATGATTGTGGGGATTTGTTACGGCTCGCAATGGTCGCTAATGCCGGCAATTACGGCGGAGATTTTTGGAATAAGGCATATGGGTACGATTTACAATACGATCACGGTAGCCAGTCCGGTTGGATCTTATGTTTTGTCTGTTAGAGTTATTGGGTATATTTACGACAGAGAAGCCTCTGCCGGAGACAACTCCTGCTCCGGCAAACACTGCTTTATGACGTCTTTTCTGATCATGGCAGCGGTGGCATTCTTGGGTTTTGTTGTTGCTGTTGCTCTGTTCCTTCGGACCAGGAGATTCTATCAACTTCTTATAGGGGGAACAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATTCAATTCAACGGAATTGGAAATGGAGATTTCCAGTTTCAATAACAAATGGGTATCAACAGTAGCCAGCGTATGGATTCAGTGCACCAGTGGGTCTCTCTACACCTTCTCCATCTATTCCCAAACCCTCAAGTCAACTCAGGGTTATGATCAGTCCACTTTGGATATCGTTTCTGTCTTCAAAGACATTGGTGTCAATTGCGGCGTCCTCGCGGGCTTTCTCTACTACTATGCCACCGCTGATGGTGGTGGTAGTCGGCCGTGGATTGTTCATTTAGCCGGTGCAATTCAGTGCTTCTTGGGTTATTTCCTGATGTGGGCTGCCGTTGCTGGCGTCTTTCCTCGCCCGCCGCTTCCCACTATGTGCTTTTTCATGTTGGTGGCTGCTCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTAACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTCGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGAACAACCTACTTCGTTTCTTCTAATGCTGGCACTGCTTCCGACCCTTAATTCCTTATTGTTCATGTGGTTTGTGAGAATTCACAATGCAGACGATGGTGTTGAAAAAAAGCATCTAAATTCCCTATCCATAGTTACTCTGTTCCTTGCTACTTACCTTATGCTCAAGATAGTTCTAGAGCATATTTTCACTTTCCAGTTCCCTCTACAAGTTGCTTCATTTATTCTACTTCTGATATTGCTTGCTTCTCCTCTATATGTTGCAATTAGAGCCCAACAGAGAGAATCCAGAAAGATTTTGCACCCTTCTGTTACTGAGAGTGATCAGCTGATTAGTCGCTCCAATCAAGAGAGCGAGGAGTTTGACAATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTATACACCATAGACTTCTGGATATTATTTTTTGCAACAGCTTGTGGCATGGGAACAGGATTAGCCACAGTGAATAATATCAGCCAGATAGGATTATCTCTTGGTTACACAAGCTTGGAGACAACTATTTTGGTTTCCCTGTGGAGCATCTGGAATTTTTTTGGTCGTTTAGGAGCTGGATATGTATCGGATTATTTTCTCCATGCAAAAGGGTGGGCTAGGCCATTGTTCATGTTCATCACTCTGGCAACCATGAGCATTGGACATGTAGTGATTGCCTCTGGTCTGCCTGGTGCTCTTTTCGCTGGTTCGGTGCTAGTGGGTGTTTGCTATGGGTCTCAATGGTCATTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCCATTACAATAGCAAGCCCTGTTGGATCTTATATATTTTCAGTTAGAGTTATTGGGTATATGTATGACAAGGAAGCATCAGGTGAAGGAGGTACTTGTACTGGAACTTACTGCTTCATGTTATCATTTCTGATTATGGCTTTTGCCACCCTTTTGGGCTCTTTGGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTCTACGATCAAGTTGTTTTTAGAAGGCTGCAACACTCATCGAGTGGATAA | 3012 | 45.45 | MEAPPSNRWIATVASIWIQCICGPSYTFGIYSSALKSSQNYSQSTLDTVSVFKDIGATAGVLAGLLDSAVVSTDRPRPPWIVLSVGAIQCFLGYIFIWAAVSGLIPRPPVWAMCLFMFLAVHAQVFFNTANVVTGVHNFQLYGGTIIGILKWSSSDPILEHILQRRPNKLSSDAGDFTGAHDCSDHEIRHNRKNRDRAQTDDSVSKTKLQNTDYSVEYHQIPGEEQRNDQLMMVTNGEMNVIKAIGTVNFWLLFSAMMCGMGSGLATINNMNQLGQSLGYKTVEIYTFVSLWSIWNFLGRLGSGYAFDLLLRELGWARPLLMAVALLTISVGHIIIASGFSGNLYLGSMIVGICYGSQWSLMPAITAEIFGIRHMGTIYNTITVASPVGSYVLSVRVIGYIYDREASAGDNSCSGKHCFMTSFLIMAAVAFLGFVVAVALFLRTRRFYQLLIGGTRRGRGRGRGRGRGRFNSTELEMEISSFNNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYATADGGGSRPWIVHLAGAIQCFLGYFLMWAAVAGVFPRPPLPTMCFFMLVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNEQPTSFLLMLALLPTLNSLLFMWFVRIHNADDGVEKKHLNSLSIVTLFLATYLMLKIVLEHIFTFQFPLQVASFILLLILLASPLYVAIRAQQRESRKILHPSVTESDQLISRSNQESEEFDNERRRESEESLNLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLETTILVSLWSIWNFFGRLGAGYVSDYFLHAKGWARPLFMFITLATMSIGHVVIASGLPGALFAGSVLVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAITIASPVGSYIFSVRVIGYMYDKEASGEGGTCTGTYCFMLSFLIMAFATLLGSLAALGLFFWRRSFYDQVVFRRLQHSSSG | 1003 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 882867 | 886825 | + | CmaCh11G001690.1 | Cma11g00169 | 302678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00169 | 1003 | SUPERFAMILY | MFS general substrate transporter | 691 | 986 | IPR036259 | - | |
Cma11g00169 | 1003 | Gene3D | MFS general substrate transporter like domains | 686 | 987 | IPR036259 | - | |
Cma11g00169 | 1003 | SUPERFAMILY | MFS general substrate transporter | 482 | 676 | IPR036259 | - | |
Cma11g00169 | 1003 | CDD | MFS_Mch1p_like | 8 | 433 | - | - | |
Cma11g00169 | 1003 | Gene3D | MFS general substrate transporter like domains | 247 | 673 | IPR036259 | - | |
Cma11g00169 | 1003 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 218 | 452 | - | - | |
Cma11g00169 | 1003 | MobiDBLite | consensus disorder prediction | 181 | 206 | - | - | |
Cma11g00169 | 1003 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 481 | 1000 | - | - | |
Cma11g00169 | 1003 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 6 | 151 | - | - | |
Cma11g00169 | 1003 | SUPERFAMILY | MFS general substrate transporter | 241 | 446 | IPR036259 | - | |
Cma11g00169 | 1003 | Pfam | Nodulin-like | 485 | 736 | IPR010658 | - | |
Cma11g00169 | 1003 | Pfam | Nodulin-like | 8 | 151 | IPR010658 | - | |
Cma11g00169 | 1003 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE | 481 | 1000 | - | - | |
Cma11g00169 | 1003 | MobiDBLite | consensus disorder prediction | 181 | 203 | - | - | |
Cma11g00169 | 1003 | Coils | Coil | 758 | 778 | - | - | |
Cma11g00169 | 1003 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE | 218 | 452 | - | - | |
Cma11g00169 | 1003 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE | 6 | 151 | - | - | |
Cma11g00169 | 1003 | CDD | MFS_Mch1p_like | 485 | 970 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00171 | Cma-Chr10:771181 | Cma11g00169 | Cma-Chr11:882867 | 1.33E-160 | dispersed | |
Cma11g00169 | Cma-Chr11:882867 | Cma13g00226 | Cma-Chr13:1767532 | 1.12E-26 | dispersed | |
Cma11g00168 | Cma-Chr11:880213 | Cma11g00169 | Cma-Chr11:882867 | 4.26E-64 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00169 | - | - | csv:101216552 | 924.85 |