Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00169 ATGGAAGCTCCTCCGAGCAACAGATGGATTGCTACAGTTGCCAGCATTTGGATCCAATGCATTTGCGGTCCTTCCTACACCTTCGGCATTTACTCCTCCGCCCTCAAATCATCTCAAAACTACAGTCAATCCACTCTCGACACTGTCTCCGTCTTCAAGGACATCGGAGCCACCGCCGGAGTTCTCGCTGGCTTACTCGACTCCGCTGTCGTCTCCACGGATCGCCCCCGTCCCCCATGGATCGTCCTCTCCGTCGGAGCAATTCAGTGCTTCCTTGGTTATATTTTCATTTGGGCTGCCGTCTCCGGTTTAATCCCTCGGCCGCCGGTGTGGGCGATGTGTTTGTTCATGTTCTTAGCCGTCCATGCCCAAGTCTTCTTCAACACGGCAAATGTCGTCACTGGCGTTCATAACTTCCAGCTCTACGGCGGCACCATCATCGGCATTCTTAAGTGGAGCAGTTCTGATCCAATCCTAGAACACATTCTACAACGGAGACCCAATAAATTATCTTCTGATGCTGGCGATTTTACCGGCGCTCACGACTGTTCTGATCATGAGATTCGTCATAATCGAAAAAACAGAGATCGAGCACAAACAGATGACTCTGTTTCCAAAACCAAGCTTCAAAATACAGACTATTCCGTTGAATATCATCAAATTCCCGGTGAAGAACAGAGAAATGATCAGCTAATGATGGTTACAAATGGAGAAATGAACGTAATCAAGGCAATTGGCACGGTGAATTTCTGGCTATTGTTTTCTGCGATGATGTGCGGAATGGGTTCTGGGTTAGCCACCATAAACAACATGAACCAACTGGGCCAGTCTTTGGGCTACAAAACAGTCGAAATCTACACATTCGTTTCACTGTGGAGCATTTGGAATTTCCTTGGGCGGTTGGGATCCGGCTATGCCTTTGATCTTCTCCTCCGGGAATTAGGCTGGGCGAGGCCATTGTTAATGGCCGTCGCCTTGTTGACGATTAGCGTCGGCCATATCATCATAGCTTCAGGATTCTCCGGGAATTTGTACTTGGGGTCGATGATTGTGGGGATTTGTTACGGCTCGCAATGGTCGCTAATGCCGGCAATTACGGCGGAGATTTTTGGAATAAGGCATATGGGTACGATTTACAATACGATCACGGTAGCCAGTCCGGTTGGATCTTATGTTTTGTCTGTTAGAGTTATTGGGTATATTTACGACAGAGAAGCCTCTGCCGGAGACAACTCCTGCTCCGGCAAACACTGCTTTATGACGTCTTTTCTGATCATGGCAGCGGTGGCATTCTTGGGTTTTGTTGTTGCTGTTGCTCTGTTCCTTCGGACCAGGAGATTCTATCAACTTCTTATAGGGGGAACAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATTCAATTCAACGGAATTGGAAATGGAGATTTCCAGTTTCAATAACAAATGGGTATCAACAGTAGCCAGCGTATGGATTCAGTGCACCAGTGGGTCTCTCTACACCTTCTCCATCTATTCCCAAACCCTCAAGTCAACTCAGGGTTATGATCAGTCCACTTTGGATATCGTTTCTGTCTTCAAAGACATTGGTGTCAATTGCGGCGTCCTCGCGGGCTTTCTCTACTACTATGCCACCGCTGATGGTGGTGGTAGTCGGCCGTGGATTGTTCATTTAGCCGGTGCAATTCAGTGCTTCTTGGGTTATTTCCTGATGTGGGCTGCCGTTGCTGGCGTCTTTCCTCGCCCGCCGCTTCCCACTATGTGCTTTTTCATGTTGGTGGCTGCTCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTAACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTCGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGAACAACCTACTTCGTTTCTTCTAATGCTGGCACTGCTTCCGACCCTTAATTCCTTATTGTTCATGTGGTTTGTGAGAATTCACAATGCAGACGATGGTGTTGAAAAAAAGCATCTAAATTCCCTATCCATAGTTACTCTGTTCCTTGCTACTTACCTTATGCTCAAGATAGTTCTAGAGCATATTTTCACTTTCCAGTTCCCTCTACAAGTTGCTTCATTTATTCTACTTCTGATATTGCTTGCTTCTCCTCTATATGTTGCAATTAGAGCCCAACAGAGAGAATCCAGAAAGATTTTGCACCCTTCTGTTACTGAGAGTGATCAGCTGATTAGTCGCTCCAATCAAGAGAGCGAGGAGTTTGACAATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTATACACCATAGACTTCTGGATATTATTTTTTGCAACAGCTTGTGGCATGGGAACAGGATTAGCCACAGTGAATAATATCAGCCAGATAGGATTATCTCTTGGTTACACAAGCTTGGAGACAACTATTTTGGTTTCCCTGTGGAGCATCTGGAATTTTTTTGGTCGTTTAGGAGCTGGATATGTATCGGATTATTTTCTCCATGCAAAAGGGTGGGCTAGGCCATTGTTCATGTTCATCACTCTGGCAACCATGAGCATTGGACATGTAGTGATTGCCTCTGGTCTGCCTGGTGCTCTTTTCGCTGGTTCGGTGCTAGTGGGTGTTTGCTATGGGTCTCAATGGTCATTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCCATTACAATAGCAAGCCCTGTTGGATCTTATATATTTTCAGTTAGAGTTATTGGGTATATGTATGACAAGGAAGCATCAGGTGAAGGAGGTACTTGTACTGGAACTTACTGCTTCATGTTATCATTTCTGATTATGGCTTTTGCCACCCTTTTGGGCTCTTTGGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTCTACGATCAAGTTGTTTTTAGAAGGCTGCAACACTCATCGAGTGGATAA 3012 45.45 MEAPPSNRWIATVASIWIQCICGPSYTFGIYSSALKSSQNYSQSTLDTVSVFKDIGATAGVLAGLLDSAVVSTDRPRPPWIVLSVGAIQCFLGYIFIWAAVSGLIPRPPVWAMCLFMFLAVHAQVFFNTANVVTGVHNFQLYGGTIIGILKWSSSDPILEHILQRRPNKLSSDAGDFTGAHDCSDHEIRHNRKNRDRAQTDDSVSKTKLQNTDYSVEYHQIPGEEQRNDQLMMVTNGEMNVIKAIGTVNFWLLFSAMMCGMGSGLATINNMNQLGQSLGYKTVEIYTFVSLWSIWNFLGRLGSGYAFDLLLRELGWARPLLMAVALLTISVGHIIIASGFSGNLYLGSMIVGICYGSQWSLMPAITAEIFGIRHMGTIYNTITVASPVGSYVLSVRVIGYIYDREASAGDNSCSGKHCFMTSFLIMAAVAFLGFVVAVALFLRTRRFYQLLIGGTRRGRGRGRGRGRGRFNSTELEMEISSFNNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYATADGGGSRPWIVHLAGAIQCFLGYFLMWAAVAGVFPRPPLPTMCFFMLVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNEQPTSFLLMLALLPTLNSLLFMWFVRIHNADDGVEKKHLNSLSIVTLFLATYLMLKIVLEHIFTFQFPLQVASFILLLILLASPLYVAIRAQQRESRKILHPSVTESDQLISRSNQESEEFDNERRRESEESLNLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLETTILVSLWSIWNFFGRLGAGYVSDYFLHAKGWARPLFMFITLATMSIGHVVIASGLPGALFAGSVLVGVCYGSQWSLMPTITSEIFGVVHMGTIFNAITIASPVGSYIFSVRVIGYMYDKEASGEGGTCTGTYCFMLSFLIMAFATLLGSLAALGLFFWRRSFYDQVVFRRLQHSSSG 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 882867 886825 + CmaCh11G001690.1 Cma11g00169 302678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00169 1003 SUPERFAMILY MFS general substrate transporter 691 986 IPR036259 -
Cma11g00169 1003 Gene3D MFS general substrate transporter like domains 686 987 IPR036259 -
Cma11g00169 1003 SUPERFAMILY MFS general substrate transporter 482 676 IPR036259 -
Cma11g00169 1003 CDD MFS_Mch1p_like 8 433 - -
Cma11g00169 1003 Gene3D MFS general substrate transporter like domains 247 673 IPR036259 -
Cma11g00169 1003 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 218 452 - -
Cma11g00169 1003 MobiDBLite consensus disorder prediction 181 206 - -
Cma11g00169 1003 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 481 1000 - -
Cma11g00169 1003 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 6 151 - -
Cma11g00169 1003 SUPERFAMILY MFS general substrate transporter 241 446 IPR036259 -
Cma11g00169 1003 Pfam Nodulin-like 485 736 IPR010658 -
Cma11g00169 1003 Pfam Nodulin-like 8 151 IPR010658 -
Cma11g00169 1003 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 481 1000 - -
Cma11g00169 1003 MobiDBLite consensus disorder prediction 181 203 - -
Cma11g00169 1003 Coils Coil 758 778 - -
Cma11g00169 1003 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 218 452 - -
Cma11g00169 1003 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 6 151 - -
Cma11g00169 1003 CDD MFS_Mch1p_like 485 970 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00171 Cma-Chr10:771181 Cma11g00169 Cma-Chr11:882867 1.33E-160 dispersed
Cma11g00169 Cma-Chr11:882867 Cma13g00226 Cma-Chr13:1767532 1.12E-26 dispersed
Cma11g00168 Cma-Chr11:880213 Cma11g00169 Cma-Chr11:882867 4.26E-64 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00169 - - csv:101216552 924.85