Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00174 ATGGCTTCCCATCAAACTTCACACCAGCGCCTCTTATCACCTCCGCCTAAAATGGATCTCCACCGTAGAACCCAACCCACCACCCCCGCCGCCGCCACCACTGTCTCTCCACACCCAACATCACCAAAACTAGATCCCATAACCCCTTTATCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTCGTTCCTGTTTCTCTTCACTCCAACCCCAAAATGGTCGGCCCCAGAACAGTCCATAAACAAGCCAAAAAACCCAACGAAACCCCTCGCCAGCACTCCACCACTGAGAAATTCAATGATTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACCACCAAAGAAAGGGAAATGAAACAGCTCCTAGTAGACCACCAACATCTCACTCGCAGGCTCTCTGTTTCTTTGTCTTCTTCACGGAGTGGAAGAAGAAAATCTATCTGTGGCTCACAGATTCAGCTAGCAGAGTTGTTCGCCAACAATGGGGTCAAAGTGGTTTCCGCCGATATGCCGCCATTTATGCAGATCCACGCCGTCGATTGCGCTAGAAAGGCCCACGACAGTATGGAAAAATTCACTTCCAAATCGCTGGCGTTGAGTCTCAAACAGGAATTCGATGGGGCATACGGGCCGGCATGGCATTGTATTGTTGGGAAGAGTTTTGGATCATTTGTGACACATTCAGTGGGTGGATTCCTGTATTTTTCCCTGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACTAAGAGCCAATTAG 783 48.15 MASHQTSHQRLLSPPPKMDLHRRTQPTTPAAATTVSPHPTSPKLDPITPLSDSDNLSKSHPPSPKVVPVSLHSNPKMVGPRTVHKQAKKPNETPRQHSTTEKFNDSEEKFERMINCITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFGSFVTHSVGGFLYFSLAQKLYILLFKTTVLRAN 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 903551 904488 + CmaCh11G001740.1 Cma11g00174 302683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00174 260 PANTHER DYNEIN LIGHT CHAIN 35 259 IPR001372 GO:0007017|GO:0030286
Cma11g00174 260 MobiDBLite consensus disorder prediction 1 106 - -
Cma11g00174 260 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 163 255 IPR037177 GO:0007017|GO:0030286
Cma11g00174 260 MobiDBLite consensus disorder prediction 26 60 - -
Cma11g00174 260 MobiDBLite consensus disorder prediction 85 106 - -
Cma11g00174 260 PANTHER INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE 35 259 - -
Cma11g00174 260 Pfam Dynein light chain type 1 169 254 IPR001372 GO:0007017|GO:0030286
Cma11g00174 260 SUPERFAMILY DLC 167 254 IPR037177 GO:0007017|GO:0030286
Cma11g00174 260 SMART Dynein_light_2 164 254 IPR001372 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00174 - - - cmax:111471403 488.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00174 Cma13g00917 CCT
Cma11g00174 Cma18g00137 CCT
Cma10g00166 Cma11g00174 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00174 Cma-Chr11:903551 Cma18g00137 Cma-Chr18:693927 7.32E-66 dispersed
Cma10g00166 Cma-Chr10:758191 Cma11g00174 Cma-Chr11:903551 4.30E-130 wgd
Cma11g00174 Cma-Chr11:903551 Cma13g00917 Cma-Chr13:7314918 8.97E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g473 Blo04g00754 Blo16g00203 Bda06g00565 Bda15g00582 Bpe12g00566 . . . Cmo13g00943 Cmo18g00107 Cma10g00166 Cma11g00174 Car10g00155 Car11g00127 Sed12g1917 . Cpe04g01525 Bhi02g00373 Tan09g2178 Cmetu02g1635 . Hepe09g0153 . . . . . . . . . Cone2ag0875 Cone16ag0135 . . Lsi02g00336 Csa01g00807 Chy12g01309 . Blo13g00031 Blo15g00289 . . Bpe07g00807 . Bma03g00806 Bma08g00197 Sed08g2555 . Cmo11g00135 Cma13g00917 Cma18g00137 Car13g00757 Car18g00129 Cpe09g01055 Cpe18g00814 Bhi08g01435 Tan05g2060 Cmetu12g0721 Lac10g0397 Hepe07g2266 . . Cla01g01408 Cam01g1470 Cec01g1513 Cco01g1557 Clacu01g1496 Cmu01g1390 Cre01g1307 Lsi06g01502 Csa01g00197 Chy02g02534 Cme02g01918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001584 3 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 3 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00174 Cma_Chr11 FPKM 1.36618 1.086921 0.56081 0.3258 2.950963 1.835519 3.254948 1.704091 1.687291 1.43767