Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00175 ATGGATCCTCCACTCGTCAATGAATCTTCCTTCTCCGCTGCCAATCCTTCTGCTTACAGCTTGGCCGCGATTTGGCCTTTCGGAGGGGAGCCGGGTGGGAGCACATTGGGACTTCGAATGGCTAATTTGGGTCAGATTCTTGGCGGGTTTCCAGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCCACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCCAGAATGGTTTCCACTAGTAGTGCGAATCAATTGAATAACTCAAAGGGTAAACGAATGAAAGTAGTGGAATCCAGGGATGAAAATGGTGATATAAAAGCTGAAGTGGAATCTAGCTCAGGAGATGGTAAGAAGGCGGCTGAGCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATGTTGCAAGACTTAGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTTGTCCTTGACGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCATGATGAAAATAAGCCCTGGCATAGAAGGTTTTACCGCAAAAAATATTGTTAATCAACCATATGATGCAGCAGCTGGAATATTATATGGTTCACAAACTGCAAGAGAATATAGCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATCGGTGGAAGTTTTGAAAGAACATCTTAG 837 45.04 MDPPLVNESSFSAANPSAYSLAAIWPFGGEPGGSTLGLRMANLGQILGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLNNSKGKRMKVVESRDENGDIKAEVESSSGDGKKAAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKMLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSMMKISPGIEGFTAKNIVNQPYDAAAGILYGSQTAREYSQGAQPEWLHMQIGGSFERTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 906624 910070 + CmaCh11G001750.1 Cma11g00175 302684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00175 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 222 IPR036638 GO:0046983
Cma11g00175 278 MobiDBLite consensus disorder prediction 69 84 - -
Cma11g00175 278 SMART finulus 160 210 IPR011598 GO:0046983
Cma11g00175 278 MobiDBLite consensus disorder prediction 85 103 - -
Cma11g00175 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 277 IPR024097 GO:0006355
Cma11g00175 278 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
Cma11g00175 278 Coils Coil 201 221 - -
Cma11g00175 278 MobiDBLite consensus disorder prediction 46 144 - -
Cma11g00175 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
Cma11g00175 278 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 277 - -
Cma11g00175 278 MobiDBLite consensus disorder prediction 48 68 - -
Cma11g00175 278 CDD bHLH_AtBPE_like 144 222 - -
Cma11g00175 278 Gene3D - 151 225 IPR036638 GO:0046983
Cma11g00175 278 MobiDBLite consensus disorder prediction 104 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00164 Cma11g00175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00949 Cma-Chr5:7663330 Cma11g00175 Cma-Chr11:906624 2.55E-91 dispersed
Cma11g00175 Cma-Chr11:906624 Cma12g00704 Cma-Chr12:3874970 2.38E-88 dispersed
Cma10g00164 Cma-Chr10:753260 Cma11g00175 Cma-Chr11:906624 8.30E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35786 PF00010 HLH 3.60E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00175 - - csv:101215588 479.559