Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00175 | ATGGATCCTCCACTCGTCAATGAATCTTCCTTCTCCGCTGCCAATCCTTCTGCTTACAGCTTGGCCGCGATTTGGCCTTTCGGAGGGGAGCCGGGTGGGAGCACATTGGGACTTCGAATGGCTAATTTGGGTCAGATTCTTGGCGGGTTTCCAGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCCACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCCAGAATGGTTTCCACTAGTAGTGCGAATCAATTGAATAACTCAAAGGGTAAACGAATGAAAGTAGTGGAATCCAGGGATGAAAATGGTGATATAAAAGCTGAAGTGGAATCTAGCTCAGGAGATGGTAAGAAGGCGGCTGAGCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATGTTGCAAGACTTAGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTTGTCCTTGACGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCATGATGAAAATAAGCCCTGGCATAGAAGGTTTTACCGCAAAAAATATTGTTAATCAACCATATGATGCAGCAGCTGGAATATTATATGGTTCACAAACTGCAAGAGAATATAGCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATCGGTGGAAGTTTTGAAAGAACATCTTAG | 837 | 45.04 | MDPPLVNESSFSAANPSAYSLAAIWPFGGEPGGSTLGLRMANLGQILGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLNNSKGKRMKVVESRDENGDIKAEVESSSGDGKKAAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKMLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSMMKISPGIEGFTAKNIVNQPYDAAAGILYGSQTAREYSQGAQPEWLHMQIGGSFERTS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 906624 | 910070 | + | CmaCh11G001750.1 | Cma11g00175 | 302684 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00175 | 278 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 222 | IPR036638 | GO:0046983 | |
Cma11g00175 | 278 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
Cma11g00175 | 278 | SMART | finulus | 160 | 210 | IPR011598 | GO:0046983 | |
Cma11g00175 | 278 | MobiDBLite | consensus disorder prediction | 85 | 103 | - | - | |
Cma11g00175 | 278 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 277 | IPR024097 | GO:0006355 | |
Cma11g00175 | 278 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 205 | IPR011598 | GO:0046983 | |
Cma11g00175 | 278 | Coils | Coil | 201 | 221 | - | - | |
Cma11g00175 | 278 | MobiDBLite | consensus disorder prediction | 46 | 144 | - | - | |
Cma11g00175 | 278 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 204 | IPR011598 | GO:0046983 | |
Cma11g00175 | 278 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 277 | - | - | |
Cma11g00175 | 278 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - | |
Cma11g00175 | 278 | CDD | bHLH_AtBPE_like | 144 | 222 | - | - | |
Cma11g00175 | 278 | Gene3D | - | 151 | 225 | IPR036638 | GO:0046983 | |
Cma11g00175 | 278 | MobiDBLite | consensus disorder prediction | 104 | 144 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00164 | Cma11g00175 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00949 | Cma-Chr5:7663330 | Cma11g00175 | Cma-Chr11:906624 | 2.55E-91 | dispersed | |
Cma11g00175 | Cma-Chr11:906624 | Cma12g00704 | Cma-Chr12:3874970 | 2.38E-88 | dispersed | |
Cma10g00164 | Cma-Chr10:753260 | Cma11g00175 | Cma-Chr11:906624 | 8.30E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35786 | PF00010 | HLH | 3.60E-08 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00175 | - | - | csv:101215588 | 479.559 |