Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00176 ATGAGTAAATCTGGGCTCCTACAAGGAAAACCAACAAATTTACTTGTGAATGGATGTCAAAATTCGGCTGCGTTTGGATTGGCGAATCATCGAAGTCCAGCCGGAGTGGACGTGGGTCGAAGCCCAAAAGCCAGAAGGTGGGCAATTTCTGAAGCCCCAATGATCCGAAACTATAAAGTATTGTCAAGCGCGGCCAATTCGTTGTTCAATCGCCTCGCGCTTTCACCTTTCCAACAAACACTTCTTCCATTATCGTGTCGCTCATCTGGGTCCCCGAAAATGGCGAGTAACGAGAGCATCAAATCAGGAAATGAAGAACAATTGAAGCCCATATTTGAGCAGAAACGGGTTCTTCGATCCAACGTTCGAAAAGCACTCAAAGCCATGGACCCTTCCCTCAGATCCCATGAAGGTACTGATTGCTTGCTTATCTTCAACGATTTACTTCGCTCTTTTGAAAATATTAATCGGATTCATAGAAAAATTGATTGTGTGTCGTCTTCTGATGTTGATGAATCGCCCCTTTCTACTTGTTTCTCAGACAATGCAATTCAGAGTATCGTTTTGGAGGCCCCGTGGTTTAAATCTAGTCAGAGATTATGTGCTTATGTGAGTTGCAGTGCCTTAAGAGAAGTTGATACGTCGAGACTGTTATCAGAGACTTTGCAACACCCACCAAAAGATGGTTATCCGAAGAAGATTTATGTCCCGCGTGTGGAGGACAAGAATAGTCATATGCGGATGTTCAATATTTCACGTATGGATGATCTTATTGCAAATTCAATGAATATCTTAGAACCAGCTCCAGTGGATGGTGATGGAAATCAACGTGAAGATGTTATGCAGACAAAAGACCCCATCGATTTACTCCTCTTACCAGGACTAGCATTTGATAAATCAGGAAGACGACTAGGCCGAGGGGGAGGTTATTATGATACCTTCCTAAAGAACTACCAAGAGCTTGCGAAGGCACGGAATTGGAAGCAGCCCCTCCTTGTTGCACTGTCCTATTCAGTACAGATAATGGATGAAGGAATTATACCTCTCACTCCAAATGATGTCTTAGTCGATGCTCTTGTAACACCATCTGGTGTGATTCCCATCAGCCCAGCTGGATTGGACAACAAGCTTGAGCTAATTCTCTTTCTGGGACTAAACTGCTTGGGCACCATGATTGCTTTGACAAGCTCACCTTTGAACATGCTTGGTTGCTTCATTATATTGTTGCTTCTTCCTTATCATTCTTTGTCAGCTGATCCTGATCCGTTGCAGGACTTCTGTGTTGCTGATTTAAATGCTACTGTATCTCTTAATGGCTTCCCTTGCAAGCCAGTTGCAGAAGTTACTTCAGATGATTTCTTCTTTGATGGATTGAGCAAAGAGGGCAACACAGACAATCCTTTCGGTTTTGCTGTTGCACAAGGAAATGTTCTTTCATTTCCAGGACTCAATACGCTTGGGATATCCATGAACCGTGTCGATCTTGCTCCTAGAGGAATAAATGCACCTCACTCGCATCCTCGTGCCACCGAAAGCATTGTCGTTATTAAAGGGAAGGTTCTTGTTGGGTTTGTGTCAACAAGTAATGTGTATTTTTACAAGGTTTTGACTGTAGGGCAGATGTTTGTCATTCCCAGAGGACTTGTTCATTTCCAGTATAATGTTGGACATAGCAAAGCAAGTCTGCTCACAGCTTTCAACAGTCAGTTGCCCGGGGCTGTGATCGTCTCTCGAACTTTATTCGCTTCAAATCCTCCAATTCCCAATCAAATTCTGACCAAGACCTTCCAAGTCGATGATGATGTTATCAACAGCATAAAGTCCAAGTTTGCCTAG 1836 43.36 MSKSGLLQGKPTNLLVNGCQNSAAFGLANHRSPAGVDVGRSPKARRWAISEAPMIRNYKVLSSAANSLFNRLALSPFQQTLLPLSCRSSGSPKMASNESIKSGNEEQLKPIFEQKRVLRSNVRKALKAMDPSLRSHEGTDCLLIFNDLLRSFENINRIHRKIDCVSSSDVDESPLSTCFSDNAIQSIVLEAPWFKSSQRLCAYVSCSALREVDTSRLLSETLQHPPKDGYPKKIYVPRVEDKNSHMRMFNISRMDDLIANSMNILEPAPVDGDGNQREDVMQTKDPIDLLLLPGLAFDKSGRRLGRGGGYYDTFLKNYQELAKARNWKQPLLVALSYSVQIMDEGIIPLTPNDVLVDALVTPSGVIPISPAGLDNKLELILFLGLNCLGTMIALTSSPLNMLGCFIILLLLPYHSLSADPDPLQDFCVADLNATVSLNGFPCKPVAEVTSDDFFFDGLSKEGNTDNPFGFAVAQGNVLSFPGLNTLGISMNRVDLAPRGINAPHSHPRATESIVVIKGKVLVGFVSTSNVYFYKVLTVGQMFVIPRGLVHFQYNVGHSKASLLTAFNSQLPGAVIVSRTLFASNPPIPNQILTKTFQVDDDVINSIKSKFA 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 910322 915762 - CmaCh11G001760.1 Cma11g00176 302685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00176 611 Pfam 5-formyltetrahydrofolate cyclo-ligase family 182 362 IPR002698 -
Cma11g00176 611 SUPERFAMILY RmlC-like cupins 419 610 IPR011051 -
Cma11g00176 611 CDD cupin_OxOx 419 610 - -
Cma11g00176 611 TIGRFAM MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 182 362 IPR002698 -
Cma11g00176 611 Gene3D Jelly Rolls 418 611 IPR014710 -
Cma11g00176 611 Gene3D - 105 368 IPR024185 -
Cma11g00176 611 SMART Cupin_1_3 456 604 IPR006045 -
Cma11g00176 611 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 89 139 - -
Cma11g00176 611 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 173 374 - -
Cma11g00176 611 SUPERFAMILY NagB/RpiA/CoA transferase-like 176 368 IPR037171 -
Cma11g00176 611 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 89 139 - -
Cma11g00176 611 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 173 374 - -
Cma11g00176 611 PRINTS Germin signature 504 524 IPR001929 GO:0030145
Cma11g00176 611 PRINTS Germin signature 534 554 IPR001929 GO:0030145
Cma11g00176 611 PRINTS Germin signature 567 582 IPR001929 GO:0030145
Cma11g00176 611 Pfam Cupin 458 601 IPR006045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00176 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - csv:101211739 509.605
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00163 Cma11g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00176 Cma-Chr11:910322 Cma03g01453 Cma-Chr3:9100593 1.10E-67 dispersed
Cma05g01044 Cma-Chr5:8339877 Cma11g00176 Cma-Chr11:910322 4.50E-67 transposed
Cma10g00163 Cma-Chr10:752434 Cma11g00176 Cma-Chr11:910322 1.41E-140 transposed
Cma11g01170 Cma-Chr11:6813492 Cma11g00176 Cma-Chr11:910322 2.30E-64 transposed
Cma12g00864 Cma-Chr12:6431619 Cma11g00176 Cma-Chr11:910322 4.73E-67 transposed
Cma10g00162 Cma-Chr10:748400 Cma11g00176 Cma-Chr11:910322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007790 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00176 Cma_Chr11 FPKM 110.495369 105.31221 11.92697 13.243281 10.156845 10.503009 9.750022 7.463003 6.694924 6.711215