Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00178 | ATGGTGTATGCATCTACTCATAACAAGAACATGCACGCCCTTCTAACAGCCAAACTCACCAAATTGACCCTCCCTTCCTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCATCCACGGCCGCCCTTCTTGACTTCGACTTCTCTGACGTATTCGGCCCCACAAATTCCTCTTTACCATCTTTCCCCGGGGACCCACAGCACAATGAACAACAACCAGCGGTCATTCATAACAGATCTCACTCATTTGTGGGTCCGTCTCCACGGTTAACTCCACCTTCTTCCCTTTCTTTTTTCCGAGAAGTTAAGTCACAGATCGAGGAGGAAGAAGATGACCTAGAAATCTCGACTGGCGATGGAGTTCAAAAGGAGAAGGGGGCGGATGAAAGCGAGAATGACGGTGGAGAAAATTCAGAGGGGAAGGTTGGAGTTGGGGATTTCGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTCTAGTGAGGAAGAAAGGGGATTCGAAAGGAAACGGTCCCAATAATGATGGGATTTACGCCATGAAAGTGATGAGAAAGGATACCATTATAAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTTCGCACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGTCCAAATCAAAACTCTATTTGATTCTTGATTTCATAAATGGGGGGCATCTGTTCTTCCATCTGTACCGGCAGGGGATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTGTCAGCTGTTTCGCATCTTCATGACTGCGGCATTGTGCACCGGGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGCCATGTTGTCCTTACGGATTTTGGACTGGCAAAGGAAATTGATGAATCGAGTCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCGGAAATCTTGCTTTCTAAAGGTCATAACAAGGATGCTGATTGGTGGAGCGTCGGAGTTCTTTTGTATGAGATGCTTAGTGGCAAGCCACCATTCACACACGCTAATAGAAAGAAGCTTCAAGAGAGAATAATCAAAGAGAAAGTGAAACTTCCACCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTATTACAAAAGGATCCCTCTAAAAGATTAGGAAGTGGACCCAACAGAGGGGCGGACATAAAAAATCACAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATATAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAAGGGAAATGACTGCACAGCAAATTTTGATAATTGTTGGACGACGATGGCCCCCGACGACTCGCCAGCTCCAACGCCAACCAACGGAGGACATTTCCACGGATACTCGTATGTTGCTCCAGACCCTTGGCTTTCATCATCTGGATAG | 1452 | 46.35 | MVYASTHNKNMHALLTAKLTKLTLPSSSSSPPPPPPPPPSSSTAALLDFDFSDVFGPTNSSLPSFPGDPQHNEQQPAVIHNRSHSFVGPSPRLTPPSSLSFFREVKSQIEEEEDDLEISTGDGVQKEKGADESENDGGENSEGKVGVGDFDILRVVGKGAFGKVFLVRKKGDSKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRYSFQSKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHDCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGKPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKDPSKRLGSGPNRGADIKNHKWFRPVNWKKLEYRELQPKFKPDVKGNDCTANFDNCWTTMAPDDSPAPTPTNGGHFHGYSYVAPDPWLSSSG | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 931023 | 934244 | + | CmaCh11G001780.1 | Cma11g00178 | 302687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00178 | 483 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 7 | 481 | - | - | |
Cma11g00178 | 483 | Pfam | Protein kinase domain | 151 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00178 | 483 | CDD | STKc_AGC | 156 | 414 | IPR045270 | GO:0004674|GO:0005524 | |
Cma11g00178 | 483 | ProSiteProfiles | Protein kinase domain profile. | 150 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00178 | 483 | SUPERFAMILY | Protein kinase-like (PK-like) | 147 | 471 | IPR011009 | - | |
Cma11g00178 | 483 | Pfam | Protein kinase C terminal domain | 435 | 472 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cma11g00178 | 483 | MobiDBLite | consensus disorder prediction | 110 | 144 | - | - | |
Cma11g00178 | 483 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 433 | - | - | |
Cma11g00178 | 483 | MobiDBLite | consensus disorder prediction | 119 | 139 | - | - | |
Cma11g00178 | 483 | MobiDBLite | consensus disorder prediction | 54 | 77 | - | - | |
Cma11g00178 | 483 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g00178 | 483 | SMART | serkin_6 | 150 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00178 | 483 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 7 | 481 | - | - | |
Cma11g00178 | 483 | SMART | pkinase_C_6 | 415 | 474 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma11g00178 | 483 | MobiDBLite | consensus disorder prediction | 14 | 77 | - | - | |
Cma11g00178 | 483 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 415 | 482 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma11g00178 | 483 | Gene3D | Phosphorylase Kinase; domain 1 | 149 | 455 | - | - | |
Cma11g00178 | 483 | ProSitePatterns | Protein kinases ATP-binding region signature. | 156 | 187 | IPR017441 | GO:0005524 | |
Cma11g00178 | 483 | MobiDBLite | consensus disorder prediction | 27 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01407 | Cma-Chr4:7195047 | Cma11g00178 | Cma-Chr11:931023 | 3.00E-62 | dispersed | |
Cma11g00178 | Cma-Chr11:931023 | Cma01g00745 | Cma-Chr1:3970817 | 7.54E-68 | dispersed | |
Cma18g00928 | Cma-Chr18:7955626 | Cma11g00178 | Cma-Chr11:931023 | 8.11E-61 | dispersed | |
Cma11g00178 | Cma-Chr11:931023 | Cma10g00161 | Cma-Chr10:728494 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68872 | PF00069 | Pkinase | 4.30E-72 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00178 | K04688 | - | csv:101214867 | 781.556 |