Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00178 ATGGTGTATGCATCTACTCATAACAAGAACATGCACGCCCTTCTAACAGCCAAACTCACCAAATTGACCCTCCCTTCCTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCATCCACGGCCGCCCTTCTTGACTTCGACTTCTCTGACGTATTCGGCCCCACAAATTCCTCTTTACCATCTTTCCCCGGGGACCCACAGCACAATGAACAACAACCAGCGGTCATTCATAACAGATCTCACTCATTTGTGGGTCCGTCTCCACGGTTAACTCCACCTTCTTCCCTTTCTTTTTTCCGAGAAGTTAAGTCACAGATCGAGGAGGAAGAAGATGACCTAGAAATCTCGACTGGCGATGGAGTTCAAAAGGAGAAGGGGGCGGATGAAAGCGAGAATGACGGTGGAGAAAATTCAGAGGGGAAGGTTGGAGTTGGGGATTTCGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTCTAGTGAGGAAGAAAGGGGATTCGAAAGGAAACGGTCCCAATAATGATGGGATTTACGCCATGAAAGTGATGAGAAAGGATACCATTATAAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTTCGCACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGTCCAAATCAAAACTCTATTTGATTCTTGATTTCATAAATGGGGGGCATCTGTTCTTCCATCTGTACCGGCAGGGGATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTGTCAGCTGTTTCGCATCTTCATGACTGCGGCATTGTGCACCGGGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGCCATGTTGTCCTTACGGATTTTGGACTGGCAAAGGAAATTGATGAATCGAGTCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCGGAAATCTTGCTTTCTAAAGGTCATAACAAGGATGCTGATTGGTGGAGCGTCGGAGTTCTTTTGTATGAGATGCTTAGTGGCAAGCCACCATTCACACACGCTAATAGAAAGAAGCTTCAAGAGAGAATAATCAAAGAGAAAGTGAAACTTCCACCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTATTACAAAAGGATCCCTCTAAAAGATTAGGAAGTGGACCCAACAGAGGGGCGGACATAAAAAATCACAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATATAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAAGGGAAATGACTGCACAGCAAATTTTGATAATTGTTGGACGACGATGGCCCCCGACGACTCGCCAGCTCCAACGCCAACCAACGGAGGACATTTCCACGGATACTCGTATGTTGCTCCAGACCCTTGGCTTTCATCATCTGGATAG 1452 46.35 MVYASTHNKNMHALLTAKLTKLTLPSSSSSPPPPPPPPPSSSTAALLDFDFSDVFGPTNSSLPSFPGDPQHNEQQPAVIHNRSHSFVGPSPRLTPPSSLSFFREVKSQIEEEEDDLEISTGDGVQKEKGADESENDGGENSEGKVGVGDFDILRVVGKGAFGKVFLVRKKGDSKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRYSFQSKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHDCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGKPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKDPSKRLGSGPNRGADIKNHKWFRPVNWKKLEYRELQPKFKPDVKGNDCTANFDNCWTTMAPDDSPAPTPTNGGHFHGYSYVAPDPWLSSSG 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 931023 934244 + CmaCh11G001780.1 Cma11g00178 302687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00178 483 PANTHER RIBOSOMAL PROTEIN S6 KINASE 7 481 - -
Cma11g00178 483 Pfam Protein kinase domain 151 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00178 483 CDD STKc_AGC 156 414 IPR045270 GO:0004674|GO:0005524
Cma11g00178 483 ProSiteProfiles Protein kinase domain profile. 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00178 483 SUPERFAMILY Protein kinase-like (PK-like) 147 471 IPR011009 -
Cma11g00178 483 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma11g00178 483 MobiDBLite consensus disorder prediction 110 144 - -
Cma11g00178 483 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Cma11g00178 483 MobiDBLite consensus disorder prediction 119 139 - -
Cma11g00178 483 MobiDBLite consensus disorder prediction 54 77 - -
Cma11g00178 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Cma11g00178 483 SMART serkin_6 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00178 483 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 7 481 - -
Cma11g00178 483 SMART pkinase_C_6 415 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma11g00178 483 MobiDBLite consensus disorder prediction 14 77 - -
Cma11g00178 483 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma11g00178 483 Gene3D Phosphorylase Kinase; domain 1 149 455 - -
Cma11g00178 483 ProSitePatterns Protein kinases ATP-binding region signature. 156 187 IPR017441 GO:0005524
Cma11g00178 483 MobiDBLite consensus disorder prediction 27 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01407 Cma-Chr4:7195047 Cma11g00178 Cma-Chr11:931023 3.00E-62 dispersed
Cma11g00178 Cma-Chr11:931023 Cma01g00745 Cma-Chr1:3970817 7.54E-68 dispersed
Cma18g00928 Cma-Chr18:7955626 Cma11g00178 Cma-Chr11:931023 8.11E-61 dispersed
Cma11g00178 Cma-Chr11:931023 Cma10g00161 Cma-Chr10:728494 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68872 PF00069 Pkinase 4.30E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00178 K04688 - csv:101214867 781.556