Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00209 ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG 1872 43.16 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVKKEEADIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1047706 1051190 + CmaCh11G002090.1 Cma11g00209 302718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00209 623 Gene3D - 290 430 IPR012340 -
Cma11g00209 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Cma11g00209 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 618 - -
Cma11g00209 623 CDD RPA1_DBD_B 312 418 - -
Cma11g00209 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
Cma11g00209 623 SUPERFAMILY Nucleic acid-binding proteins 445 620 IPR012340 -
Cma11g00209 623 Gene3D - 6 112 IPR012340 -
Cma11g00209 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma11g00209 623 Gene3D - 174 282 IPR012340 -
Cma11g00209 623 Gene3D - 431 620 IPR012340 -
Cma11g00209 623 PANTHER REPLICATION FACTOR A 1, RFA1 5 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma11g00209 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cma11g00209 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Cma11g00209 623 MobiDBLite consensus disorder prediction 1 22 - -
Cma11g00209 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Cma11g00209 623 CDD RPA1_DBD_C 455 619 IPR013955 -
Cma11g00209 623 CDD RPA1_DBD_A 179 282 - -
Cma11g00209 623 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Cma11g00209 623 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00209 Cma-Chr11:1047706 Cma16g01216 Cma-Chr16:9204013 1.53E-78 dispersed
Cma11g00209 Cma-Chr11:1047706 Cma06g00602 Cma-Chr6:2913219 1.64E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00209 K07466 - csv:101208545 1085.86