Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00212 ATGTTGAGAAGCTCACAAGAAAAGGGTTTTGGAGGCAAAGATGAAGGAATCAGTGATGAAAAATATGATATGGCTAAGGGTTCAACGAGGTCAAGGCAGTGGTCAGGGTTTAGAAATCCAAGAATTGTGAGGGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACTATAAGGGGTTTGAGAGATAGAAGGATAAGGCTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTTAAACTTGGGCAGCCTAGCAAGGTCATAGATTGGCTACTCGACGTCACGAAACTTGATATCGACAAGCTTCCACCGCTCCAGATCCCGACCGGGTTGTCTCCGTTTCACCAACATATGCTCTTCCCTCAATATCATCATAATTCCAGTACTCTCCCTCCTCCGTTCGCCTTCGACACGAAGGATTCTTCGACGACGCTTATCAGAGATGTCGTGAATCAAACGACGATGATCGAGAAATCGAAGTCGAAAGGGAAGTGGATTGATGGAGGTAATGATGAAGAAGTTGAAGATTATAATGAGCAAATTATGATAAACAATTGTAATGCTTACAATTACAACACTTGTGATCATGATCATCAGCATTCTTGTGGGGGTTTTCCATCACAAACTGAGGCTCAAACAAGTTCATCTTCATGTTCTTCACTTTTTTTCACTCCATATGCTTCATACATCACAAACCCATTTGAAAGCCACATCCATTTCTTGAGCTCAAATTCTCATACTTTGTCCAATCCCTTCATACCATCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCTCCAAACTTCAATCTCAAGCAGCTTCTTCATGCTGGCAACAACGACGGCTGCGGTTCCGGTAAAGATGGGGCGGCGTCTGGTAGCTCATAG 918 42.92 MLRSSQEKGFGGKDEGISDEKYDMAKGSTRSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDKLPPLQIPTGLSPFHQHMLFPQYHHNSSTLPPPFAFDTKDSSTTLIRDVVNQTTMIEKSKSKGKWIDGGNDEEVEDYNEQIMINNCNAYNYNTCDHDHQHSCGGFPSQTEAQTSSSSCSSLFFTPYASYITNPFESHIHFLSSNSHTLSNPFIPSSLHPFASQNLKPFPPNFNLKQLLHAGNNDGCGSGKDGAASGSS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1067558 1068475 + CmaCh11G002120.1 Cma11g00212 302721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00212 305 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g00212 305 Pfam TCP family transcription factor 51 125 IPR017887 -
Cma11g00212 305 MobiDBLite consensus disorder prediction 8 27 - -
Cma11g00212 305 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Cma11g00212 305 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 304 IPR005333 GO:0003700
Cma11g00212 305 PANTHER TRANSCRIPTION FACTOR TCP5 28 304 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00212 Cma13g01069 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00411 Cma-Chr1:2080804 Cma11g00212 Cma-Chr11:1067558 1.30E-38 dispersed
Cma11g00212 Cma-Chr11:1067558 Cma14g01163 Cma-Chr14:9212725 1.46E-41 dispersed
Cma11g00212 Cma-Chr11:1067558 Cma13g01069 Cma-Chr13:8093105 6.94E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35790 PF03634 TCP 3.00E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00212 - - mcha:111007241 390.193