Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00212 ATGTTGAGAAGCTCACAAGAAAAGGGTTTTGGAGGCAAAGATGAAGGAATCAGTGATGAAAAATATGATATGGCTAAGGGTTCAACGAGGTCAAGGCAGTGGTCAGGGTTTAGAAATCCAAGAATTGTGAGGGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACTATAAGGGGTTTGAGAGATAGAAGGATAAGGCTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTTAAACTTGGGCAGCCTAGCAAGGTCATAGATTGGCTACTCGACGTCACGAAACTTGATATCGACAAGCTTCCACCGCTCCAGATCCCGACCGGGTTGTCTCCGTTTCACCAACATATGCTCTTCCCTCAATATCATCATAATTCCAGTACTCTCCCTCCTCCGTTCGCCTTCGACACGAAGGATTCTTCGACGACGCTTATCAGAGATGTCGTGAATCAAACGACGATGATCGAGAAATCGAAGTCGAAAGGGAAGTGGATTGATGGAGGTAATGATGAAGAAGTTGAAGATTATAATGAGCAAATTATGATAAACAATTGTAATGCTTACAATTACAACACTTGTGATCATGATCATCAGCATTCTTGTGGGGGTTTTCCATCACAAACTGAGGCTCAAACAAGTTCATCTTCATGTTCTTCACTTTTTTTCACTCCATATGCTTCATACATCACAAACCCATTTGAAAGCCACATCCATTTCTTGAGCTCAAATTCTCATACTTTGTCCAATCCCTTCATACCATCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCTCCAAACTTCAATCTCAAGCAGCTTCTTCATGCTGGCAACAACGACGGCTGCGGTTCCGGTAAAGATGGGGCGGCGTCTGGTAGCTCATAG 918 42.92 MLRSSQEKGFGGKDEGISDEKYDMAKGSTRSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDKLPPLQIPTGLSPFHQHMLFPQYHHNSSTLPPPFAFDTKDSSTTLIRDVVNQTTMIEKSKSKGKWIDGGNDEEVEDYNEQIMINNCNAYNYNTCDHDHQHSCGGFPSQTEAQTSSSSCSSLFFTPYASYITNPFESHIHFLSSNSHTLSNPFIPSSLHPFASQNLKPFPPNFNLKQLLHAGNNDGCGSGKDGAASGSS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1067558 1068475 + CmaCh11G002120.1 Cma11g00212 302721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00212 305 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g00212 305 Pfam TCP family transcription factor 51 125 IPR017887 -
Cma11g00212 305 MobiDBLite consensus disorder prediction 8 27 - -
Cma11g00212 305 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Cma11g00212 305 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 304 IPR005333 GO:0003700
Cma11g00212 305 PANTHER TRANSCRIPTION FACTOR TCP5 28 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00212 - - - mcha:111007241 390.193
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00212 Cma13g01069 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00411 Cma-Chr1:2080804 Cma11g00212 Cma-Chr11:1067558 1.30E-38 dispersed
Cma11g00212 Cma-Chr11:1067558 Cma14g01163 Cma-Chr14:9212725 1.46E-41 dispersed
Cma11g00212 Cma-Chr11:1067558 Cma13g01069 Cma-Chr13:8093105 6.94E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g460 Blo04g00796 . . . Bpe12g00521 . Bma06g00019 . Cmo13g01114 . . Cma11g00212 Car10g00278 Car11g00191 Sed08g0281 Cpe20g00081 Cpe04g01456 Bhi02g00091 Tan09g2038 Cmetu07g0568 . Hepe09g0277 . . Cla06g01535 Cam06g1693 Cec06g1756 Cco06g1755 Clacu06g1661 Cmu06g1607 Cre06g2419 . . . . . Csa01g00607 Chy12g01493 Cme12g01933 . . Bda11g01762 Bda14g00885 . Bpe15g00574 Bma03g00857 Bma08g00244 Sed01g2290 Cmo10g00314 Cmo11g00214 Cma13g01069 . Car13g00905 . . Cpe18g00710 Bhi08g01077 Tan05g2351 Cmetu12g1931 Lac10g0172 Hepe07g2456 . . Cla04g01148 Cam04g1204 Cec01g1716 Cco01g1761 Clacu04g1231 Cmu04g1211 Cre01g1507 Lsi06g01407 Csa01g00299 Chy02g02437 Cme02g01824
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00788 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.9e-65 245.0
Cma04g01259 . 36 250 TCP Transcription Factor Family AT5G23280 61.8 2.2e-64 243.0
Cma04g02246 . 74 303 TCP Transcription Factor Family AT5G23280 59.9 9.4e-63 237.7
Cma18g00810 . 33 230 TCP Transcription Factor Family AT5G23280 57.6 2.6e-57 219.5
Cma04g01649 CCT,ECH 60 154 TCP Transcription Factor Family AT3G47620 88.7 5.7e-40 162.9
Cma13g01122 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.2e-39 161.0
Cma04g01856 . 129 211 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cma04g01856 . 129 221 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cma14g00730 . 49 316 TCP Transcription Factor Family AT3G27010 58.8 8.4e-61 231.5
Cma11g01520 . 32 276 TCP Transcription Factor Family AT3G27010 54.4 7.6e-54 208.4
Cma17g01429 . 37 254 TCP Transcription Factor Family AT3G27010 52.8 8.2e-48 188.3
Cma15g00788 . 10 255 TCP Transcription Factor Family AT5G08330 60.0 8.1e-64 241.1
Cma04g02246 . 40 302 TCP Transcription Factor Family AT5G08330 57.5 5.2e-63 238.4
Cma04g01259 . 8 248 TCP Transcription Factor Family AT5G08330 56.0 2.0e-62 236.5
Cma18g00810 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 3.0e-58 222.6
Cma11g00212 CCT 31 173 TCP Transcription Factor Family AT5G60970 58.6 1.6e-39 161.0
Cma14g01163 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 1.9e-37 154.1
Cma11g01924 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35790 PF03634 TCP 3.00E-23 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00212 Cma_Chr11 FPKM 0.0 0.0 0.199698 0.190066 5.552531 7.591656 6.606119 0.077787 0.0 0.0