Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00214 ATGGAAATGGCTGTTTGCGATGCAAAGGCTAGTTTGGAAAAGAAAAGGAAAAAAAGACATACAACGAGGGGTAACACTAATGACGGAGATTGTGGTCCTACTGAAGATAATGCTTCAACAGATAGTAATGTTTCTCAAGAATCGCTGAACAAAATATGCTTAAATATGGAGCCAGGAATGGTGCAATCTCATTTAGAAGTAAATCTTTCAGAGGAAAAGAATGAGAAGAAGCGTGTTGCTTTACAATGTGGAGAAGCTTCTGGAATATCTGTCTCGACCATATTGAACGTTGAGGTTCTTAAAGCAGAAAATGAGATGTCTACTTCCCTAAATGAAGACTTTTGTTCTGCCGATGGAAAGGAAAATTCTTTAGTTCCTGAGGATCCAGATGTGATAGGCACGAATATGGTCAAAAGAGATGATGAAAATACAGAGACTATAGATCATTCAACTCCTTCAAGCCATGTTGAAACCCAAGGGATAATAAAAATAAAATGCCATAGTGAAAAGGAAAGGTCATTAGAGTCCCCTAAAAAAAGTTTAGAATCCAGTGCGGAGGGCAAAATGAAAGTTTCTCTGTTGACCCATCCTCATGAAGCGGAAACAACTGGCCACCTTAAAAATTTTGCAAAAGAAGAGAACGGGATGTTGTTGGAAGAATCAATTGACTGCTCAATTAGTGAAGAAACAGAGTTGTCATCAAATACAAAGGAAAGCTCTATGGTAATTGCAGATGCTCATAGGTTCAAGGATTTTGAAAATACATCGATGACTAGAAAAGATGATGACTGCTTAGATACTAAAGATCGTTTGGCTCAATCAAACAGTGATGATATCCATGGCCAAACGAAAAGAGAGAGAGAAAAAAGTCGGAGAAGGAGAAAGTTTGCAGATACCCTTGAAGGAAGTTTGAATTCTGATGCGGAAGACAATAAGAAAAATGCTACTTACAGCTGTTTAAATGAAGTGGGTGCAACTAGTTTGCATGAATATTCTTCCACCACTGAGCTAGTAACAAATGCTTTGGTGGAAGAAGTGTCCTTCAACAGCTCCCTGGGTGTACTCACATCAGATGTGAAGGAGAGAGGGGAAACCATAAATCAAAAGGTTCCTCGCTCATTGGCTTGTGATGCAACAAGTGATATCATCGGTGCTGTTCAAGAGAAAAACAGTTTATCACGGATATCAAATTCTTCAAATGAAAGAGATGCAACGGGTTTTCCAAAGAAAAAACTTCTAATACTTGATGTAAATGGACTTCTCGTAGATTTTGTTCCATATTTTCCAGATGGATACACTCCAGACATTGTAATATCATCTAAAGCAGTGTTTAAAAGGCCCTTCTGTGATGACTTTCTACAGTTTTGTTTTGAGAGATTTGAAGTGGGGATATGGTCATCAAGAACCTGGAAGAACCTAAACACGTTAGTTAAGTTTATTATGAGAGATTCCAGACACAAGCTACTATTTTGCTGGGATCAATCGCACTGTACAACTACAAGGTTCACCACTATTGAGAACGATAGGAAGCCCCTTGTTCTGAAGGAACTGAAAAAAATATGGGAAAGTTTGGAACCGAATCTTCCATGGAAAAAGGGGGAGTATAATGCATCAAATACTTTGTTGTTGGATGATACCCCATACAAGGCCTTGCGCAATCCAGCTAATACTGCAGTATTTCCCCCTACATATAGGTACAAGGACAGTGATGATACATCATTAGGACCTGGTGGTGATCTTCGCACATACTTGGAGGGTGTATCTACGGCAGAAGATGTTCAAAAATATGTTGAACTTAATCCATTTGGTCAAAAGCCCATTTCTGAATCTAGTCCATTTTGGAATTTCTACCGTACGGTTATAAATAGTGAGAGGGAAACATGGTGTAGATTGATATTGACAGTTCTGGGGAAGTTCGTCGGATTCGACTCTCAAGCTGCAAAGGAGTGGTCAATTCAAGGGAGCAGGTGGGGCAAGAAAAAAGAGAATGAAGTTAGATTCTTATTGTACTATGCAATGAACAGGACAGTGGCAGAAACTGATGTGTTGATTAATACTCTTTGA 2064 38.95 MEMAVCDAKASLEKKRKKRHTTRGNTNDGDCGPTEDNASTDSNVSQESLNKICLNMEPGMVQSHLEVNLSEEKNEKKRVALQCGEASGISVSTILNVEVLKAENEMSTSLNEDFCSADGKENSLVPEDPDVIGTNMVKRDDENTETIDHSTPSSHVETQGIIKIKCHSEKERSLESPKKSLESSAEGKMKVSLLTHPHEAETTGHLKNFAKEENGMLLEESIDCSISEETELSSNTKESSMVIADAHRFKDFENTSMTRKDDDCLDTKDRLAQSNSDDIHGQTKREREKSRRRRKFADTLEGSLNSDAEDNKKNATYSCLNEVGATSLHEYSSTTELVTNALVEEVSFNSSLGVLTSDVKERGETINQKVPRSLACDATSDIIGAVQEKNSLSRISNSSNERDATGFPKKKLLILDVNGLLVDFVPYFPDGYTPDIVISSKAVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNTLVKFIMRDSRHKLLFCWDQSHCTTTRFTTIENDRKPLVLKELKKIWESLEPNLPWKKGEYNASNTLLLDDTPYKALRNPANTAVFPPTYRYKDSDDTSLGPGGDLRTYLEGVSTAEDVQKYVELNPFGQKPISESSPFWNFYRTVINSERETWCRLILTVLGKFVGFDSQAAKEWSIQGSRWGKKKENEVRFLLYYAMNRTVAETDVLINTL 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1074741 1082258 - CmaCh11G002140.1 Cma11g00214 302723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00214 687 Pfam NLI interacting factor-like phosphatase 411 594 IPR004274 -
Cma11g00214 687 MobiDBLite consensus disorder prediction 26 46 - -
Cma11g00214 687 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 178 623 - -
Cma11g00214 687 MobiDBLite consensus disorder prediction 1 46 - -
Cma11g00214 687 MobiDBLite consensus disorder prediction 258 308 - -
Cma11g00214 687 SUPERFAMILY HAD-like 408 596 IPR036412 -
Cma11g00214 687 MobiDBLite consensus disorder prediction 166 187 - -
Cma11g00214 687 SMART forpap2 409 571 IPR004274 -
Cma11g00214 687 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 178 623 - -
Cma11g00214 687 MobiDBLite consensus disorder prediction 166 185 - -
Cma11g00214 687 Gene3D - 372 601 IPR023214 -
Cma11g00214 687 MobiDBLite consensus disorder prediction 258 285 - -
Cma11g00214 687 MobiDBLite consensus disorder prediction 292 308 - -
Cma11g00214 687 ProSiteProfiles FCP1 homology domain profile. 406 587 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00214 - - - mcha:111007122 891.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00292 Cma11g00214 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00412 Cma-Chr1:2084874 Cma11g00214 Cma-Chr11:1074741 9.55E-93 dispersed
Cma10g00292 Cma-Chr10:1298437 Cma11g00214 Cma-Chr11:1074741 0 wgd
Cma11g00214 Cma-Chr11:1074741 Cma13g01067 Cma-Chr13:8076664 4.44E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g458 . . . . . . . . . . Cma10g00292 Cma11g00214 . Car11g00193 Sed08g0286 Cpe20g00082 Cpe04g01454 Bhi02g00089 Tan09g2033 Cmetu02g0987 . . . . . . . . . . . . . . . Lsi02g00127 Csa01g00609 Chy12g01491 Cme12g01931 . . . . . Bpe15g00572 . . . . Cmo11g00216 . . Car13g00903 . . Cpe18g00711 Bhi08g01074 . . Lac10g0174 Hepe07g2454 . . . . . . . . . Lsi06g01406 Csa01g00303 Chy02g02435 Cme02g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010718 0 2 0 0 0 1 2 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 1 1 1 0 1 3 5 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00214 Cma_Chr11 FPKM 4.018895 5.048208 4.791032 5.209722 5.786222 6.504488 7.179558 5.76362 5.269758 6.390838