Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00215 ATGTATGGTCAACCAAATTATGGTTCTCAGTTCGGGCAGGGTCCTCAGAAACCATGGCCACCTGCATACCAACAGCGTGCAGTAGCACCTCCTCCGCCTCCTCCTCCTACCTCATATATTCAACCAGGCCCTCCAATCCCATCACGTCCTATAACTCAACAACCACCTGCACCTCAACTCCAGGCTGGGCAACCTCTTTATATGTCTCAGTCTGGTTCCCATGGCCCACCCCCACCTCCTCCCCCACCTCCCCTTTGTCAGCGCCCATCCATTCAAGTTCTATCTGGTGGGATCACAAATATCCATCAAACATATTTTCACACGTTTCCACCAGTCCATGGAAGCACACAAGTTTCTCAATTTAACTCAAATGCTCAGTCTGGAGTTCAGAACACGCATCACGTTCTACCTCCACCACCGCTGCTACCACCGCCGCCACCACGCCCTCTTCATGCTCCTAGTCCGGATTTATTACGGCCTCCGCAGTTTTCTACTATAGTACCTCTTCATCCTCGTTCTCAGGGACAAACATTGTATGGAGCTCGAATTAATCCACCGTTGCAACAAGGTGGTTTGCAGATCTTTCCCTCTATCCCACAACATCCCACAACATCCAATTTTCCTACTCCCCCTTCTTTTGGAGGACTCATGCAATCAAATCTTGGAGAACCTCATTTGCTTCCAGTGGCTCCTCCACCACCACCATCCTATCCACCACCTATTCCACCTTCTCCCCCTCCTCCCACCTCGCCTTCTTCTTCAATTCCAAACTCAGATTCCTCCAACTTGTTGTGCCAGATTGAATTTGATCCTAGTTCAACCATTCACTGTAGTAAAAGGTTAAAGGCATTTGAAAATGATCCAGTAGTCGCATCTCCCAGTCATTTAGGGGATAATAGACCCAAGCATGACAAACACAGAAATTTAGAGGGTGGTATTGGCCTCATGATGGGTTCTAAAGTTGACAATGAGATATTTTCAGACAAAGATTATGTGCAGGTTCTTCCACCATCTCCACCTAAGCCAAAAGATGATAGAATTGTCAGGAAAATAGAAGTGTTATGTCAGCTCATTGCTAGTAATGGTTCCAGTTTTGAAGACGCAACTCGTCACAAGGAATTTGGGAATCCAGAGTTTCAATTTTTATTTGGTGGTGAACCGGGAAGTGAATCTGCAATTGGCCATGAATATTTCCTGTGGATGAAGAAGAAATATAGCTTGGCTTGCAAAAATAAAGAAATGAAAGCAAAATCTCCATCGAGATCTTTAGGCATTGAACCACAATCTGAGTATTTGACAGTGTCAGCAGCATCCATTTCACCTGCAAACTCTGACATGGAGATGGGAGATGACATCACCCCAGCTGCTAGAGGAGAAGAAACTGGTCACTTAGTTCAAATTCAAAGCTACAAGAGAAAATCAAGAAAAGAGGAGTATGATGTAAAGGATCAGTTACAAGGACCTGAAGATTCACAAAGATGTAGCCGAGAAAAGGAGATAGAAGCTGAAGATGGAGGGCCGAAACTACTGCTTGGCCATGAAAAATCTGTCAGCGCTGCAGCTTGTCAAGTTCACATTCCAGACAGAATTTCTGCTGGACTTTCTGAACCGGCTTTAGGAAACAATTTTGAGAGTTCTGTTACGTGCTCGCAAAATGACAAAAATCTATCTGGTGAAGTTGCAGCTTTTGAAGCCACTAATTCTAGTCAGTCTGCTGCACTTGTTGCAGGTGGCAGCCCGTTTAGACTTATACAGGACTATTCTTCGGATGAAAATTCAGAAAGCGATGAGGAATCACACCTTAAAGATGTCCGGTTTGTTGCTGTCTCACCTTCAACTCCAGTATCTTCCAAGACTTCAGACAAATACACTGATCAACTGACTAATCTTGGATCAAAAGGTTCTTGCCAGGTTGAACTGAGTTATGCTCCAACTTGTGAACACTCCATGCCTGAATCTGGTGCTCATTTCCTCTCAGGACCACCAAAGTTGGTTTTTGATGCCAATGAGGCAAATGTCAGAAAGACAGGGAATGAACAGAGTTGCAACAACCAACGGAATCAAATTGGTACTAGCACCAGTCCTAAGTCTTTGGATGCATTGAATGGTCGTAGTGTTGATGTTGTCCAGGATACTGACAAGTTACGAAAAGAAAATGATGAGGAAAAGGTGAAGCTGGGATCATCTCCTGTAAAAATAGATGAATTTGGAAGATTAGTTAGAGAAGGTGGCAGTGATAGTGATTCAGATGATTCACTCTATATAAGGAGACATAAGAATAGAAGAGCTAGAAGTAGTAGCGAAAGTCATTCTCCTGTCGATAGGAGGGGACGAAGGAGTCCATGGAGAAGAAGGGAGAGGCGAAGCCGCTCTCGCAGTTGGTCTCCTCGTAACCAAAGAGGCAGAGGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGGTCTCCTGTCAGCAGACGTACAAATCAATTTAATAATGAGAATATGAGACGGGATAAGGGTATTATGATACGGAAATGCTTTGACTTTCAGCGCGGTAGGTGCTATAGAGGAGCATCTTGTCGCTATGTGCACCATGAACCCAGCAAGAACGATGGATCAAGACTTCACAGGAGCAAACATCATGATGTTCACCCAACTTCAAAGAATATAAAAAGTAGAGAAGACACTATGAACACGTCTAGGGACATATCAGATCTTGGGCATATTAAAGTTGAGAATCAGGAGTGCATCCAGCATAATGTGTCCCCAAAGCATGATGCCCATGCTTGGAATACTGATAGTCCCACTCGCGATGTGCATAGATGTCAGAGTTCTAGAGATGGAACTAGCTTAGTTGAAGAAGATTTAATAAATTCAAAACCAGCAGGAGCTGTCCACATTCATGTTAACAATAATGGTCAAGAAACAGAGAAGTCTTATGAGCAATGTTCAGTTGTGGCCTCATCACAATGCATGAGCAATGCTGATACTGAGAAATTCTCTGGTGATATTTCCACAAGCATGCTGACTTCTGCGGAGAATTCTGTGGCTCAGCAATCCAACATGCTTGTTTCAGAGCTTCAAACTGCTAATAGCTACTCACGCCCGATGGATGGTTCTTTTATCTCCAATTTATTACCTGATCAAGTAACTGTGGTTACCACCAATAAAGCTCCTGAGTGTGAACTTTTTCCGGATAAAACTTCATCCATCAATGAACAGTTTGATGCCAGTTCTGCTAGTCAGCCACCTATGACCTCACAATTTTTATCGGAGTCTCCAATACCGAAACAATTTTCTGCTACTGCTCCAGGTTGTGCTAATGACGATGCCCATTCTCTTAGAGCGCTGCCTCCTCCCCCTCCTCTGCTTCCTCACATGACTTCACATGTCAATGGTGCTGAGGTTCCAATTTCTGCCCCATATAGTTTTGTGTCACAAAATGCATCCTTTCCTTCTAAATCTTCGTTGCCAGGAGGTTTTCATCCTCATCAAGATTTTGTATCCATCCAACCATCTAATGACCACAGTACCCCTTTACTGCCACCGAGACGGTTGTATGATTCAACATTGGCTCCTACAACGACCAAAGATGGTACGCCAATGCAATTTCATCAGAGTAATTTGTCTCAAGGAAGTGATCTAGGTTCCCAGTCTGTTATGAAATCCCAGCCATTGGAGTTGCATTCTCGTTCAAAGATTGGTGAGTCCCCATTACAGGAGCCTTGTAGAGGTCCAATGCATATGGATGAAATTAGATCTAGTACCCCAGTTGCAACCAATCGACCTAGTCTACCATTTGGATTCCCGAGCTTTTCGAATGAAGAAAACTTTGGGCGGACTTCTGTGGAGATGAATTCTTCAAGTTTTTTTCCTCGGCGAAACTTTAATGACCAATCTATGCCCTTTACAGATGCAAATAGAATGCAATTTTCTGATGACAATTTCCCTCCTAGTGAGTTTCGAAGTTCATTTTCACAGTTTCATCCTTATTCACGGTTTCAACAGCCATTTTATGCCTCACAGCCTGCTCATGATGGTTTGTTACGTGACTCAAGTCAGATTGGTACTATGTCTCGACATTATCCCGATCCTTCAATCAGGAACCATTCATCTTTGCCCCCTGATTTTCGGGGTTTGGGAGTTACCACTTATCATAATCCTTATGCATCTACTTTTGAGAAACCACTCAGCTCCACCTACAGTTCTAACATTTTGAACTTTGGAAATGATGCACCTAGTGGTGATATACGCGATTCTACTTTCAATGCGAGCAATGCTCGAGTTGATGGCCAAGGTGCTAATTATGTTGGATCAAGACTGACAACTGCGTCTCCAAACTCTACCAAACCTTTGGGGAAACTCTTGCCCAGCCCAGGTGGTGATCAGTATGATCCACTCTTTGACAGCATGGAGCCATCATCACCTATAATTAGGAAATCCGATCGTGGTCAAAAGCTGGAAAAAACAAGAGAATATCATATGACGACGAGACTTGGTAGTTCCCATAAATTACTAGATGTGGAGGAGAACAACAAGCATAAGGAAGTTGTTGCTGTGGCTTCGACTACTTCGCTGGATAATGATGAATTTGGGGAGACAGCTGATGCAGAAGCTGGTGCTGTTGAGGATGACTTTGATGATGAAGCAAACTTATCAGGAGAGATTGAAATTGATCAGGTTAAGTCCTCAGAGAAGAGCAAGAAATCCAAAGGTTCTAGGTCCCTTAGGCTTTTCAGGATTGCTATTGCCGATTTTGTTAAGGAAATTCTAAAACCGTCATGGAGACAGGGCAACATGAGCAAAGAAGCTTTTAAGACAATCGTCAAAAAGACTGTTGACAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAACAAAAACTTACCAAGCTTGTTATGGGTTATGTTGACAAGAATTATGCATTTGTCTCGAACATCTACAGGGGATGGATAGGTGATATATCCAGCGTTCGTAAATGTCGGTCAGAGTTTAAGTCATGGTCTTGTGGATACTGGAGAAATAATGAAGCTTAA 5067 43.42 MYGQPNYGSQFGQGPQKPWPPAYQQRAVAPPPPPPPTSYIQPGPPIPSRPITQQPPAPQLQAGQPLYMSQSGSHGPPPPPPPPPLCQRPSIQVLSGGITNIHQTYFHTFPPVHGSTQVSQFNSNAQSGVQNTHHVLPPPPLLPPPPPRPLHAPSPDLLRPPQFSTIVPLHPRSQGQTLYGARINPPLQQGGLQIFPSIPQHPTTSNFPTPPSFGGLMQSNLGEPHLLPVAPPPPPSYPPPIPPSPPPPTSPSSSIPNSDSSNLLCQIEFDPSSTIHCSKRLKAFENDPVVASPSHLGDNRPKHDKHRNLEGGIGLMMGSKVDNEIFSDKDYVQVLPPSPPKPKDDRIVRKIEVLCQLIASNGSSFEDATRHKEFGNPEFQFLFGGEPGSESAIGHEYFLWMKKKYSLACKNKEMKAKSPSRSLGIEPQSEYLTVSAASISPANSDMEMGDDITPAARGEETGHLVQIQSYKRKSRKEEYDVKDQLQGPEDSQRCSREKEIEAEDGGPKLLLGHEKSVSAAACQVHIPDRISAGLSEPALGNNFESSVTCSQNDKNLSGEVAAFEATNSSQSAALVAGGSPFRLIQDYSSDENSESDEESHLKDVRFVAVSPSTPVSSKTSDKYTDQLTNLGSKGSCQVELSYAPTCEHSMPESGAHFLSGPPKLVFDANEANVRKTGNEQSCNNQRNQIGTSTSPKSLDALNGRSVDVVQDTDKLRKENDEEKVKLGSSPVKIDEFGRLVREGGSDSDSDDSLYIRRHKNRRARSSSESHSPVDRRGRRSPWRRRERRSRSRSWSPRNQRGRGRSRSRSRSRSRSRSPVSRRTNQFNNENMRRDKGIMIRKCFDFQRGRCYRGASCRYVHHEPSKNDGSRLHRSKHHDVHPTSKNIKSREDTMNTSRDISDLGHIKVENQECIQHNVSPKHDAHAWNTDSPTRDVHRCQSSRDGTSLVEEDLINSKPAGAVHIHVNNNGQETEKSYEQCSVVASSQCMSNADTEKFSGDISTSMLTSAENSVAQQSNMLVSELQTANSYSRPMDGSFISNLLPDQVTVVTTNKAPECELFPDKTSSINEQFDASSASQPPMTSQFLSESPIPKQFSATAPGCANDDAHSLRALPPPPPLLPHMTSHVNGAEVPISAPYSFVSQNASFPSKSSLPGGFHPHQDFVSIQPSNDHSTPLLPPRRLYDSTLAPTTTKDGTPMQFHQSNLSQGSDLGSQSVMKSQPLELHSRSKIGESPLQEPCRGPMHMDEIRSSTPVATNRPSLPFGFPSFSNEENFGRTSVEMNSSSFFPRRNFNDQSMPFTDANRMQFSDDNFPPSEFRSSFSQFHPYSRFQQPFYASQPAHDGLLRDSSQIGTMSRHYPDPSIRNHSSLPPDFRGLGVTTYHNPYASTFEKPLSSTYSSNILNFGNDAPSGDIRDSTFNASNARVDGQGANYVGSRLTTASPNSTKPLGKLLPSPGGDQYDPLFDSMEPSSPIIRKSDRGQKLEKTREYHMTTRLGSSHKLLDVEENNKHKEVVAVASTTSLDNDEFGETADAEAGAVEDDFDDEANLSGEIEIDQVKSSEKSKKSKGSRSLRLFRIAIADFVKEILKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQQKLTKLVMGYVDKNYAFVSNIYRGWIGDISSVRKCRSEFKSWSCGYWRNNEA 1688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1086026 1094351 - CmaCh11G002150.1 Cma11g00215 302724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00215 1688 MobiDBLite consensus disorder prediction 676 700 - -
Cma11g00215 1688 ProSiteProfiles SURP motif repeat profile. 350 398 IPR000061 GO:0003723|GO:0006396
Cma11g00215 1688 MobiDBLite consensus disorder prediction 55 71 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 676 704 - -
Cma11g00215 1688 SUPERFAMILY Surp module (SWAP domain) 329 405 IPR035967 GO:0003723|GO:0006396
Cma11g00215 1688 MobiDBLite consensus disorder prediction 741 832 - -
Cma11g00215 1688 Gene3D Surp module 347 407 IPR035967 GO:0003723|GO:0006396
Cma11g00215 1688 MobiDBLite consensus disorder prediction 136 153 - -
Cma11g00215 1688 PANTHER EXPRESSED PROTEIN 1 1649 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 1 90 - -
Cma11g00215 1688 ProSiteProfiles Zinc finger C3H1-type profile. 841 863 IPR000571 GO:0046872
Cma11g00215 1688 MobiDBLite consensus disorder prediction 741 757 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 1151 1179 - -
Cma11g00215 1688 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1649 - -
Cma11g00215 1688 Pfam Surp module 351 401 IPR000061 GO:0003723|GO:0006396
Cma11g00215 1688 MobiDBLite consensus disorder prediction 72 88 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 920 943 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 470 508 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 199 216 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 199 262 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 777 817 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 116 133 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 116 153 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 455 508 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 861 894 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 24 54 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 226 253 - -
Cma11g00215 1688 MobiDBLite consensus disorder prediction 926 943 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00215 - - - mcha:111007314 2266.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01088 Cma-Chr3:7450425 Cma11g00215 Cma-Chr11:1086026 1.59E-21 dispersed
Cma07g00795 Cma-Chr7:3608380 Cma11g00215 Cma-Chr11:1086026 1.90E-21 dispersed
Cma11g00215 Cma-Chr11:1086026 Cma10g00292 Cma-Chr10:1298437 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00215 Cma_Chr11 FPKM 5.447543 5.657776 9.457789 9.316482 9.229248 8.970497 9.581652 9.154519 8.698013 8.427323