Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00217 ATGCCGCCATTACCGTATCTGCATCTCAGAAGGTTTTTTATTCGGTCTCTTTCATCATCTTCGTATTTATCTGCCTCGTCGTCCTCAAGTTCTTTGAATGAAGCTTCGAAGAGCGTTGTTTTACGTCGAGATTTGACCTCTGTTTTCCACCATTTCCGTCGTCGAGGACCGGCATTGGGGTGTTCTTATCTATCCCAACTCTCACTTTCTCATTCGTTCTTTTCCGAGTCCGGTGAGAATGATGTGGATCAATCATCGCAGTCGCTTGCGGCCGAGCTTCTTAAAGACCCCGATTTGGATCCTCTTCCCATTACGAAGCGCCTTCAGCTTTGCTTTTCGCATGTTAAACCAAATCCGGAGTTAATTCTCAATACGCTCAATTTCTCCTCGGAAGCTGGCCGAACTGTGTTAGGGTTTAACGAGTGGTTAATATCGAATCCTGATTTTCATCACACGGATGAGACTATATCGTATTTCGTCGATTATTTTGGTCGTAGGAAGGATTTCAATTCGATTCACGAAGTTCTTGCGAAGGGCTCAGGGATCAGTGGGGCTAAAACCCTGCGGTCGACCATTGATCGGTTCGCTCGTGCTGGACGACCCACAAAGTTGTTATCATTTTTCGAGACAATGGAGAAGAATTATGGATTTAAGAGGGATAAAGAGTCGATTAGGATGGTGGTGGAGAAGCTTTGTGAAAACGGCTACGCGAGCCATGCTGAGAAGATGGTCAAAGACTTGGCGCACGAATTTTTCCCAGACGAAGCAATTTGCGATACTCTCATCAAAGGATGGTGCGTCAATGAGAAACTCGATGAAGCGAAAAGGCTGGCAGGTGAGATGTATAGGGGAGGGTTTGAGTTAGGGACAACGGCCTACAATGCTCTGCTTGACTGTGTTTGCAAGCTTTGTAGGAAAAAGGATCCGTTTAAGCTTCAATCTGAGGCTGAGGAAATTCTGGTGGAAATGGATTGTCGGGGGGTTCCAAGAAATGTGGAAACTTTCAATGTACTGATTAATAATCTGTGCAAGATTAGGAAAACTACGGATGCACTAAATTTGTTTCATCGAATGGGGGAGTGGGGATGTCATCCTAACGCTGAAACGTTCCTTATTTTGATCAAAAGTTTGTATCAAGCGGCCAGGACGGGAGAGGGGGATGAAATGATTGACAGGATGAGGTCTGCGGGATATGCTGATGCACTTGATAAGAAGGCTTATTATGAGTTTCTGAAGATTTTGTGTGGGATCGAGAGGATTGATCATGCCCTGATTGTTTTTGCGAAGATGAAGAAGGATGGGTGTGAGCCTGGCATTAAGACATATGATCTATTGATGGGAAAACTCTGTGCCCATAATCGTCTGGACAGAGCAAATTCACTCTTTAATGAAGCTCAGAAACGGGGAGTTCCAGTCACTCCAAAAGCTTATCAGGTTGAGCCAAGGTATGCAAAGAAGCCAAAGGTAAAGAAGGTTGAGAAGAAGAGGGAGACATTGCCAGAGAAAATGGCAAGGAAGAGGAGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAGCCAAAAAAAACAATGCGTAGAGCATTTTGA 1590 44.59 MPPLPYLHLRRFFIRSLSSSSYLSASSSSSSLNEASKSVVLRRDLTSVFHHFRRRGPALGCSYLSQLSLSHSFFSESGENDVDQSSQSLAAELLKDPDLDPLPITKRLQLCFSHVKPNPELILNTLNFSSEAGRTVLGFNEWLISNPDFHHTDETISYFVDYFGRRKDFNSIHEVLAKGSGISGAKTLRSTIDRFARAGRPTKLLSFFETMEKNYGFKRDKESIRMVVEKLCENGYASHAEKMVKDLAHEFFPDEAICDTLIKGWCVNEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFKLQSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRKTTDALNLFHRMGEWGCHPNAETFLILIKSLYQAARTGEGDEMIDRMRSAGYADALDKKAYYEFLKILCGIERIDHALIVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDRANSLFNEAQKRGVPVTPKAYQVEPRYAKKPKVKKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKKTMRRAF 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1101592 1103181 + CmaCh11G002170.1 Cma11g00217 302726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00217 529 TIGRFAM PPR: pentatricopeptide repeat domain 441 472 IPR002885 -
Cma11g00217 529 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Cma11g00217 529 Pfam PPR repeat 260 285 IPR002885 -
Cma11g00217 529 Gene3D Tetratricopeptide repeat domain 308 399 IPR011990 GO:0005515
Cma11g00217 529 Gene3D Tetratricopeptide repeat domain 400 523 IPR011990 GO:0005515
Cma11g00217 529 Pfam Pentatricopeptide repeat domain 421 447 IPR002885 -
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Cma11g00217 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 45 528 - -
Cma11g00217 529 Gene3D Tetratricopeptide repeat domain 154 307 IPR011990 GO:0005515
Cma11g00217 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cma11g00217 529 PANTHER ATPASE EXPRESSION PROTEIN 3 45 528 - -
Cma11g00217 529 Pfam PPR repeat family 331 377 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00217 - - - cmax:111465769 1008.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00217 Cma13g00908 CCT
Cma10g00290 Cma11g00217 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00205 Cma-Chr10:911131 Cma11g00217 Cma-Chr11:1101592 1.67E-40 dispersed
Cma11g00217 Cma-Chr11:1101592 Cma04g02095 Cma-Chr4:14612952 1.00E-36 dispersed
Cma10g00290 Cma-Chr10:1286483 Cma11g00217 Cma-Chr11:1101592 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009519 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00217 Cma_Chr11 FPKM 19.157862 20.276232 19.479145 19.458387 31.659195 33.566593 35.421284 21.802643 22.693459 22.881231