Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00218 ATGAGGTCTCGGCCCTTCTCTTCCACTGGATCCGTCGCCGAACTTACCGGCTTTGGCCTCTTGCTTCTCTTTCTACTTTCATGCTTCAGTTTCACTTCGACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAATGGGATGTAATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACAGTGGGCTGGACTTGGGCAAAGAAAGAAGTGATTTGGAGCATGATGGGAGCCCAAACAACGGAACAGGGAGACTGTTCAAGGTTCAAAGGAAATACTCCACATTGCTGCAAGAAAGATCCAACCGTTGTGGATCTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGTAAGGGTGGAGTGATAAACTCCTGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTCCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCGGGACCTGGATATACTTGTGGTCCAGCAAAGATTGTGAAGTCAACAAAATTTATATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATCGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAATACGGCAGGTTCTGGGAGCTGTGTGAATCCAGATTCTCCACATTTAGCTTCAGTGGTATCAACTCCTGATAAATCGGGCAACTATGAACCCCTGGTTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGACTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTTGTGGCGCAGCATCCCAATTTTGATAACATAACTCAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCCTACGGTGACCTAAATGATACTGCTATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTCGGTAATGTGCAGTCTGAGCTCCTATTCCGGAAAGACCAAAACACTTTCACTTTCGATAAGGGTTGGGCTTTCCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCCTATTTGCCAAATGCCAGTTCCAGACCAGCTATGTCTTTACTTGCGACAGCCTTAATATCTCTGGCATTACTGTTGAATTTTGCTCTGTAA 1368 44.74 MRSRPFSSTGSVAELTGFGLLLLFLLSCFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTVGWTWAKKEVIWSMMGAQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKSTKFISGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVNPDSPHLASVVSTPDKSGNYEPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVAQHPNFDNITQLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFRKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPAMSLLATALISLALLLNFAL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1105995 1109284 + CmaCh11G002180.1 Cma11g00218 302727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00218 455 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cma11g00218 455 PANTHER COBRA-LIKE PROTEIN 11 450 - -
Cma11g00218 455 PIRSF COBRA 10 455 IPR006918 GO:0010215|GO:0031225
Cma11g00218 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Cma11g00218 455 PANTHER PROTEIN COBRA 11 450 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00218 Cma13g01062 CCT
Cma11g00218 Cma13g01062 ECH
Cma10g00289 Cma11g00218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00420 Cma-Chr1:2113623 Cma11g00218 Cma-Chr11:1105995 0 dispersed
Cma10g00289 Cma-Chr10:1281832 Cma11g00218 Cma-Chr11:1105995 0 dispersed
Cma11g00218 Cma-Chr11:1105995 Cma14g01158 Cma-Chr14:9168574 0 dispersed
Cma11g00218 Cma-Chr11:1105995 Cma11g00220 Cma-Chr11:1109507 0 proximal
Cma19g00723 Cma-Chr19:7310841 Cma11g00218 Cma-Chr11:1105995 1.31E-89 transposed
Cma10g00288 Cma-Chr10:1279530 Cma11g00218 Cma-Chr11:1105995 0 wgd
Cma11g00218 Cma-Chr11:1105995 Cma13g01062 Cma-Chr13:8051454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00218 - - csv:101213424 882.093