Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00220 ATGGAAGTTAATACCTACAGTGATCTATCACACAAAATTCTTTTTCAAACGGAATGCTACTCGGCTCGACAGAAAAGAGTTGTACTCTTAGCACTTCTGATCTTTGCAACTTTCTATTCAACTGAGGCTTATGATCCATTGGATCCGAATGGAAACATAACAATCAAATGGGATGTAGTTTCTTGGACGCCAGATGGATATGTTGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATGCACCAGGATGGACCCTGGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCTATGGTGGGAGCTCAGACAACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAACGTACCTCATTGCTGCAAGAAAACCCCAGTAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAACCAGCAGTTCTCCAATTGCTGCAAGGGTGGAGTGTTGGCTTCTTGGGGACAGGACCCAGTAGGTTCAGTCTCTGCCTTTCAGGTGAGTGTTGGACTAGCTGGCACTTCGAACAAAACGGTAAAGTTGCCGAAGAACTTCACTCTGCTTGGTCCAGGACCAGGCTACACATGTGGACCTGCAAAAGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGCGGAAAACCCAAGCATTGATGACATGGAATGTAACCTGCACTTACTCACAGTTTCTGGCCTCTAAGAACCCAACTTGCTGCGTATCACTCTCGACTTTCTACAATGATACGATCACTTCTTGCCCAACCTGTGCATGTGGCTGCCAGAACAAACACAATTGTATAAAGAGTAACTCAAAGCTACTGCACAAGGACGGAATAAATACTCCTAAAAAGGATAATACGCCTTTACTACAGTGCACCCATCACATGTGTCCTGTTCGAGTACACTGGCACGTAAAAATTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTAACCAACTTCAACTATAGGATGAACTATACGCTATGGACACTGGCAGTGCAGCATCCAAATCTGAATAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTAGTTCCCTATGAATCCATTAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTAATGAAGAAGGACAAGGATACATTTACCTTCAAGCAGGGTTGGGCCTTTCCTAGAAAAGTATACTTCAACGGCGACGAATGTCAGATGCCACCACCAGAATCATACCCATTTCTACCCAACTCTGCTCCTGAAGGCTCCAGTGCAGTTACCGAGTTGACCACCTCCTTGCTTTTGATAATCTGGCTTTTGTGGTGA 1371 44.13 MEVNTYSDLSHKILFQTECYSARQKRVVLLALLIFATFYSTEAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSNSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPEGSSAVTELTTSLLLIIWLLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1109507 1112015 - CmaCh11G002200.1 Cma11g00220 302729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00220 456 PIRSF COBRA 14 456 IPR006918 GO:0010215|GO:0031225
Cma11g00220 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215|GO:0031225
Cma11g00220 456 PANTHER COBRA-LIKE PROTEIN 27 453 - -
Cma11g00220 456 PANTHER PROTEIN COBRA 27 453 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00288 Cma11g00220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00421 Cma-Chr1:2116647 Cma11g00220 Cma-Chr11:1109507 0 dispersed
Cma10g00288 Cma-Chr10:1279530 Cma11g00220 Cma-Chr11:1109507 0 dispersed
Cma11g00220 Cma-Chr11:1109507 Cma14g01158 Cma-Chr14:9168574 0 dispersed
Cma11g00218 Cma-Chr11:1105995 Cma11g00220 Cma-Chr11:1109507 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00220 - - cmo:103494059 908.672