Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00224 ATGGCTAAGAAACACACCCGATTGCAGAGGTTGAGAGTTTCTCAATCGTCGGCTTGTTTCAAGGTCTGTTTCCAGCAGATTCGAACCAGACCCACCGGCGATTTGATTAAGACTTGTCAGAAGGAGGAGCTATTAGGGCATGGGGCGGATGAGTATTGCACGGACAGCGCGAAGTCTGTGGCTGAGATTGGTAATCGAATCATGGTTGTGGTTGATTCTAGTTTTGGGGGCAAAGGGGCTCTTGAATGGGCTTTGTCTCATGCTGTTCAAAATCAAGATTCTATTATTCTTCTTCATGTTGCCAAGTCTTCAAAACAAGGCGTTGTGTTTGATGAAATGCTTGACATGAAGGTTTATCAACTTCTTCTGTGTATGAAGAATATGTGCCAAATGAGAAGGCCAGGGGTTAAAGTGGAGATGGAATTCCTACAAGGGAAGGAGATGGGTCGTGTCATTGTGGAAGAAGCAAAGAAACAGCGAGTGTCTTTGCTGGTTCTTGGGCAAAGAAAGCAGTCACCATTCTGGTCACTGGTAAAGAAGTTCAGTACAAACAAGAGAAGGAGTCATGGCGGGATTGTGGAGTACTGCATCCAAAACTCTTCATGCCCGACCATTGCGGTGAGGAGGAAGAGCAAGAAACTAGGAGGCTGCCATTGCTTTTTGTGCGGAGGAAAACAAGATGGAAATTGTGAGGCTTCTGATATTATTCAATAA 714 45.1 MAKKHTRLQRLRVSQSSACFKVCFQQIRTRPTGDLIKTCQKEELLGHGADEYCTDSAKSVAEIGNRIMVVVDSSFGGKGALEWALSHAVQNQDSIILLHVAKSSKQGVVFDEMLDMKVYQLLLCMKNMCQMRRPGVKVEMEFLQGKEMGRVIVEEAKKQRVSLLVLGQRKQSPFWSLVKKFSTNKRRSHGGIVEYCIQNSSCPTIAVRRKSKKLGGCHCFLCGGKQDGNCEASDIIQ 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1122547 1126819 + CmaCh11G002240.1 Cma11g00224 302733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00224 237 Pfam Universal stress protein family 66 208 IPR006016 -
Cma11g00224 237 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 216 - -
Cma11g00224 237 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 65 211 - -
Cma11g00224 237 Gene3D HUPs 64 216 IPR014729 -
Cma11g00224 237 CDD USP_Like 66 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00224 - - - cmax:111465801 431.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00224 Cma13g01058 CCT
Cma11g00224 Cma13g01058 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01711 Cma-Chr4:8609437 Cma11g00224 Cma-Chr11:1122547 7.96E-50 dispersed
Cma11g00224 Cma-Chr11:1122547 Cma15g00682 Cma-Chr15:3263758 1.52E-14 dispersed
Cma13g01043 Cma-Chr13:7961352 Cma11g00224 Cma-Chr11:1122547 7.28E-07 dispersed
Cma11g00224 Cma-Chr11:1122547 Cma13g01058 Cma-Chr13:8032668 1.23E-55 wgd
Cma11g00224 Cma-Chr11:1122547 Cma18g01096 Cma-Chr18:8982094 1.75E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g436 . . . . . Bpe13g00318 . . Cmo13g01102 . . Cma11g00224 . Car11g00200 Sed08g2163 Cpe20g00090 . Bhi02g00072 Tan09g2012 Cmetu02g0670 . Hepe09g0289 . . Cla06g01526 Cam06g1683 Cec06g1745 Cco06g1743 Clacu06g1650 Cmu06g1597 Cre06g2408 . . . . Lsi02g00139 Csa01g00623 Chy12g01478 Cme12g01919 . . Bda11g01768 Bda14g00892 . Bpe15g00566 Bma03g00868 . Sed01g2281 . Cmo11g00227 Cma13g01058 . Car13g00893 . . . Bhi08g01057 Tan05g2333 Cmetu12g1433 Lac10g0185 Hepe07g2443 . . . . . . . . . Lsi06g01395 Csa01g00337 Chy02g02405 Cme02g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002926 2 2 1 3 2 2 2 2 2 2 1 2 1 2 2 2 2 0 1 2 2 2 2 2 1 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00224 Cma_Chr11 FPKM 2.709365 3.488158 5.551868 5.42153 0.856352 0.54373 0.750321 2.092355 1.083925 1.780437