Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00226 ATGGAGGAGAGTGAGAGTGAAATCCGAATCAAAACCCTAACCGGAGAATCACTGACCATCTCCATTTCCGGCGACAGAACAATTGAGGACCTCAAGCTTCTACTTAGGAAGAATTTCCCCTCCGCAACCGTTTCCCCCAATTTTCACCTCTTTTCTAAGGGTACTAAGTTGAAACCGCAGAGTGAAATTAGTGCATGCCGCATTGACAAAGGCGAATTTCTAGTGCTCATTCCATTTACTAAAAAGGAATCTTCCAAGCCTCAACTTCGCGATCAATATGAACAAGGATCCAGTGTTTCGGGCGGAAGCTCAATTTCTCTATTCGCTGATTCTGCATGGTCCGATATGGTCCAGGATTTGTCGTATTTACATGACTGTTCTGTTCAAGGGAGAGAGAGAAATGGCCTCGAGAGTGAGAGAGGGAATTTTGAAACTGGAGGTGTTGATTCTGAACTGGCAGCGACGTGTACTACCGGTCCTTCTAGTTTGAAAGCAAGAGGCAAAAAGGGTTTCATTTGTAATGACTCGAATGGGATTTTAGATGACATTTTGAGGAACTTGTTATCGTCTCCTACTGTGGGATTGTTAAGCGAATACAATTGCGAAAACTTGATTAAGTTTTTGGAGTCTGTGGATTGTTTATCAGACCCACGTAATGAGAAGTGCTTGTTGGCAAAACAAGCTAATTCCCGAAGTGGCAGCAGAAAAGCGCCAAATAGAACACGTTGTTCTTCATGCCTATGTCCAGTGTGGCTGAAGAAGATAATGAAGACATTTGCTTTCTTAAATGTTCTATCAATGTTTGCTCAACTACGAGAAGAAATTATAACTGCAAGTCGGTTGGAACAAGCAATGGACCTGCTGCAGAAACATGGAATTACGCTTCGTATGGAGGACATGAAGCATCTCTCTCTTCTTTGTCCCAAGGTAGTACATTTTGCAAGTGGCACTTTGGAAGATAGCTATGATGATAAGATTATCATTGTTAATTATTTGACCGCACAAAATAGTCGATGGACAGCTGATAATACGGCATATAAACTGTCGTCCAAAGCACCAACGGATATCACTCCAATGAAGAGACGGGAAAAATCCTTTAAATTTTACCTTTGGGAGGCTATTAAGGGCCATATGCTTAGACATGGAAGCAGAAGTGAGATATGTGTGTCTTTTTCTTTGGAAGATTTAATTACGTCGAAAGCGTCTGCTGTGGATGGAAATGAAGCGAAGCGAGCAAAAAAAAGTGACATGGCTTCGTCAAGTTCTCAATCTGATCGAGTACAATGTCATGACACTTCGAAACTCTTACCTGAGAACATGGTTGAACATCTTGAAAAGGGTATTGGATCTGAGGGTCAGATAGTGCACGTCGAAGATATTGCGGCTAGAAAAGCTAATTATGTGGAAATTCCGGAGGAACTTTCTAATAATGTTATATCAGCACTTAAATGTATTGGAGTAGAAAAGTTGTATAGCCATCAGACAAGGTCGATAGAAGCCTCCCTGGCTGGAAATCATGTTGCAGTTGCTACAATGACATCAAGTGGAAAATCTCTGTGCTATAACTTGCCAGTTCTTGAATCAATGTCTCAAGATGTCTCATCATGTGCACTTTACTTATTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGTTTGCTTGTCATGATGAAAGGGTTTAATGCTGACCTTAACATTGGCGTTTATGATGGTGATACCTCACAGTCTGACCGGATTTTATTGCGTGATAATGCTAGGCTGTTAATCACAAATCCTGATATGCTACATCTATCAATCCTGCCACAGCACAGACAATTTAGTCGGATATTATCAAATCTGCGGTTTATAGTCATTGATGAGGCTCATACTTATAAGGGAGCATTTGGATGTCATACTGCACTAATAATACGGAGACTTCGCCGGCTTTGCTCTCATGTGTATGGAAGTGATCCTTCTTTTATATTCTGTACAGCAACTTCTGCAAATCCACGCCAACATTGCATGGAACTTGGAAGTCTGTCAAGCTTAGAGCTGATTGAAAATGATGGAAGTCCTTCTGCCAGAAAACTATTCATCCTCTGGAATCCTATTATGGCCTCAAAAAGTTCTCAGAGAGGTATTGATTCTCTGCAGAGTACAGAAAAGAATGCTAATTTCAGAAATCCAAGCCCAATTATGGACATTGCGAGGCTCTTTGCAGAAATGGTTCAGCATGGACTTCGCTGCATTGCTTTTTGTAAAACTCGTAAACTTTGTGAACTCGTTTTATGCTACACGCGCGAAATTCTTAAGGAGAGAGCTCCCCATCTGGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATAGAGAGTGACTTCTTTGGGGGAAACCTTTGTGGTGTTGCTGCTACAAATGCCCTTGAATTGGGTATTGATGTAGGCCACATTGATGCAACTCTGCATTTGGGCTTTCCTGGTAGTATTGCTAGCTTGTGGCAACAAGCAGGCAGGGCAGGAAGGAGAGAAAAGACTTCTCTTTCTGTATATGTTGCATTTGAAGGGCCTCTTGATCAATATTTCATGAAACACCCTGAAAAACTTTTTGGGAGTCCAATTAAGTGCTGCCATATTGATGCTGAAAACCAACAGGTTCTTGAACAGCATTTGTTGTGTGCTGCATATGAACACCCAGTTTGTATGGTTTATGATCAGAATTTGTTTGGTCCTGGCTTAAACACTGCCCTAATGTCTCTAAAAAGTAGAGGAGATTTGATTCCTGCACCATCATGTGGTTCATCCAAAAGTATTTGGACTTATATTGGGAAAGAGAAAATGCCTTCACGCTCAGTTAGTATCCGAGCGATTGAAGCAGAGAGATACAAAGTTGTAGATCAGCGCCAAAATGAAGTTCTCGAAGAGATTGAGGAAAGCACGGCTTTCTTTCAGGTTTATGAAGGTGCTGTTTATATGCATCAAGGACGAACTTATCTGGTCAAAAGCTTGAATTTGTCAACTATGCTTGCTTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGTGATTACACTGACATTCATGTTATTGGTGGTAGTTTGGCCTATCCAAGGAGAGCTCCAAATATTCCGCTCTTAAAAACAACTGCACAAGCAAATGATTGCAGAGTTACCACCACTTGGTTTGGTTTCTATCGAATATGGAAAGGAAGTAATCAAATTTTTGACACAGTGGACCTCTCCCTTCCAAAATATTCGTATAACTCTCAGGCAGTTTGGATTCCAGTACCACTATCTATAAAAGAAGAGGTGAAGAGGAAAAACTATGACTTTCGTGCAGGCTTGCATGCGGCTTCACATGCTCTTCTGAATGTAGTACCATTACGTATAATTTGCAACATGTCTGACTTGGCTCCTGAATGTGCAAATCCTCATGATTCTCGCTATTTTCCAGAAAGGATTCTGTTGTATGATCAGCATCCTGGAGGAACTGGTATGTCACTTCAGATTCAACCCGTTTTCATAGAGTTGTTGAATGCTGCTTTAGAACTTCTCACCTCTTGCTGCTGCTTCGGAGAGACCGGCTGCCCTAACTGTGTCCAAAGTCTGGCCTGTCACGAATACAACGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGGGTGTTCTGGATACAGAGAAAACATATTACAGCCCGTAA 3708 41.45 MEESESEIRIKTLTGESLTISISGDRTIEDLKLLLRKNFPSATVSPNFHLFSKGTKLKPQSEISACRIDKGEFLVLIPFTKKESSKPQLRDQYEQGSSVSGGSSISLFADSAWSDMVQDLSYLHDCSVQGRERNGLESERGNFETGGVDSELAATCTTGPSSLKARGKKGFICNDSNGILDDILRNLLSSPTVGLLSEYNCENLIKFLESVDCLSDPRNEKCLLAKQANSRSGSRKAPNRTRCSSCLCPVWLKKIMKTFAFLNVLSMFAQLREEIITASRLEQAMDLLQKHGITLRMEDMKHLSLLCPKVVHFASGTLEDSYDDKIIIVNYLTAQNSRWTADNTAYKLSSKAPTDITPMKRREKSFKFYLWEAIKGHMLRHGSRSEICVSFSLEDLITSKASAVDGNEAKRAKKSDMASSSSQSDRVQCHDTSKLLPENMVEHLEKGIGSEGQIVHVEDIAARKANYVEIPEELSNNVISALKCIGVEKLYSHQTRSIEASLAGNHVAVATMTSSGKSLCYNLPVLESMSQDVSSCALYLFPTKALAQDQLRSLLVMMKGFNADLNIGVYDGDTSQSDRILLRDNARLLITNPDMLHLSILPQHRQFSRILSNLRFIVIDEAHTYKGAFGCHTALIIRRLRRLCSHVYGSDPSFIFCTATSANPRQHCMELGSLSSLELIENDGSPSARKLFILWNPIMASKSSQRGIDSLQSTEKNANFRNPSPIMDIARLFAEMVQHGLRCIAFCKTRKLCELVLCYTREILKERAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSPIKCCHIDAENQQVLEQHLLCAAYEHPVCMVYDQNLFGPGLNTALMSLKSRGDLIPAPSCGSSKSIWTYIGKEKMPSRSVSIRAIEAERYKVVDQRQNEVLEEIEESTAFFQVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEADLKYYTKTRDYTDIHVIGGSLAYPRRAPNIPLLKTTAQANDCRVTTTWFGFYRIWKGSNQIFDTVDLSLPKYSYNSQAVWIPVPLSIKEEVKRKNYDFRAGLHAASHALLNVVPLRIICNMSDLAPECANPHDSRYFPERILLYDQHPGGTGMSLQIQPVFIELLNAALELLTSCCCFGETGCPNCVQSLACHEYNEVLHKDAASLIIKGVLDTEKTYYSP 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1132314 1145548 - CmaCh11G002260.1 Cma11g00226 302735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00226 1235 PANTHER ATP-DEPENDENT HELICASE HRQ1 19 1232 - -
Cma11g00226 1235 ProSiteProfiles Ubiquitin domain profile. 6 77 IPR000626 GO:0005515
Cma11g00226 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 862 IPR027417 -
Cma11g00226 1235 Gene3D - 7 95 - -
Cma11g00226 1235 CDD DEXHc_Hrq1-like 490 671 - -
Cma11g00226 1235 Pfam Helicase conserved C-terminal domain 733 842 IPR001650 -
Cma11g00226 1235 SMART ultradead3 486 692 IPR014001 -
Cma11g00226 1235 Gene3D - 715 889 IPR027417 -
Cma11g00226 1235 Gene3D - 460 676 IPR027417 -
Cma11g00226 1235 SMART helicmild6 762 843 IPR001650 -
Cma11g00226 1235 MobiDBLite consensus disorder prediction 407 430 - -
Cma11g00226 1235 CDD Ubl_ubiquitin_like 8 77 - -
Cma11g00226 1235 SUPERFAMILY Ubiquitin-like 3 78 IPR029071 -
Cma11g00226 1235 CDD SF2_C_Hrq 692 852 - -
Cma11g00226 1235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 728 886 IPR001650 -
Cma11g00226 1235 Pfam MrfA Zn-binding domain 1119 1201 IPR018973 -
Cma11g00226 1235 Pfam DEAD/DEAH box helicase 492 662 IPR011545 GO:0003676|GO:0005524
Cma11g00226 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 498 679 IPR014001 -
Cma11g00226 1235 MobiDBLite consensus disorder prediction 416 430 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00226 - - - bhj:120070581 2056.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00226 Cma-Chr11:1132314 Cma13g01047 Cma-Chr13:7975283 1.74E-07 dispersed
Cma11g00226 Cma-Chr11:1132314 Cma18g00718 Cma-Chr18:6494989 4.77E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00226 Cma_Chr11 FPKM 0.606621 1.025496 2.666935 2.983047 6.007126 5.960574 7.089639 5.773813 5.380259 5.344899